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Name : clpA (MS1783) Accession : YP_088975.1 Strain : Mannheimia succiniciproducens MBEL55E Genome accession: NC_006300 Putative virulence/resistance : Virulence Product : ClpA protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1776499 - 1779069 bp Length : 2571 bp Strand : - Note : ATPases with chaperone activity, ATP-binding subunit DNA sequence : ATGAATATCGAAAAATTTACCACAAAATTCCAACAGGCATTGGCCGAAGCGCAGTCATTAGCATTGGGAAAGGATAATCA GTATATCGAGCCGGTTCATGTGCTGAGCGCCTTGATTAATCAGCAAGACGGTTCGGTGGCGCCGATTTTGACTTCCGCCG GCGTGAATGTCGGGGCGTTGAAAGCGGAATTAAATAGTGAAATCAATAAATTGCCGCAGGTTTCCGGCAACGGCGGAGAT GTGCAGATTTCCCGTCAGCTACTGAATTTATTGAATTTGTGCGACAAAATTGCACAGCGCAACAATGATAAATTTATTTC ATCGGAATTATTTTTACTGGCCGCATTGGAAGAAAAAGGCAGCCTTGGCGATTTACTTAAAAAGTGCGGTGCAAAAAAAG AAAGTTTAGAACAAGCGATTAAAACCATTCGTGGGGGACAAAGCGTGAATGATCAAAATGCGGAAGAAAGCCGTCAGGCT CTTGAAAAATATACTATTGACTTAACCGAGCGGGCGGAAAGCGGCAAGCTTGACCCGGTAATCGGTCGTGATGAAGAAAT TCGTCGTGCAATCCAGGTGTTACAACGCCGTACTAAAAATAACCCGGTGTTGATCGGTGAGCCCGGTGTAGGTAAAACCG CTATCGTAGAAGGGTTGGCTCAACGTATCGTAAACGGCGAAGTGCCGGAAGGGTTGAAAGGCAAACGCGTACTTTCCCTT GATATGGGTGCTTTAATTGCCGGGGCAAAATACCGCGGCGAATTTGAAGAACGTTTGAAAGCGGTATTAAAAGAGCTGGC GCAAGAAGAAGGCAAGGTGATTTTGTTTATCGATGAAATTCACACCATGGTAGGAGCCGGTAAAACCGACGGCGCTATGG ATGCGGGCAACTTATTAAAACCGTCTCTTGCCCGTGGCGAATTGCATTGCGTAGGGGCGACGACTTTAGACGAATATCGT CAATACATCGAAAAAGACGCCGCACTTGAACGCCGTTTCCAAAAAGTATTTGTAGATGAACCGACAGTGGAAGACACCAT TGCCATTCTGCGCGGTTTGAAAGAGCGTTATGAGCTGCACCATCACGTGCAAATTACCGACCCGGCAATCGTAGCGGCGG CAACGCTTTCTCATCGCTATATTTCCGATCGTCAATTACCGGATAAAGCGATCGATCTGATTGATGAAGCGGCATCCAGC ATTCGTATGGAAATCGATTCCAAACCTGAGCCGTTAGATCGTTTGGATCGTCGTATTATTCAATTAAAACTTGAACAACA GGCATTGAAGAAAGAAGAAGACGAAGCAAGCCGCAAGCGTTTGGATATGCTTGAAAAAGAATTAAGCGAAAAAGAACGGG AATATGCGGAGCTGGAAGAAGTCTGGAAAAGTGAAAAAGCCGCCCTTTCCGGCACGCAACATATTAAAGCCGAGCTTGAA AGCGCCCGTACGCAAATGGAACAGGCACGTCGCGCCGGCGATTTGAATAAAATGTCCGAATTGCAATACGGCACGATTCC GGCATTGGAAAAACAACTTGCAGCGGCAGATAGCGCAGAAGGCAAGGAAATGAGTCTGTTGCGTAACCGCGTGACCGACG AAGAAATCGCCCAGGTACTTTCCCGCGCAACCGGTATTCCGGTTTCCCGCATGATGGAAGGCGAAAAAGAAAAATTATTG CGTATGGAAGAGGAATTACATAAACGCGTTATCGGGCAAGGTGAAGCGGTGGAAGCGGTGGCGAACGCCATTCGTCGTAG CCGTGCGGGGCTTTCCGACCCGAACCGTCCGATTGGCTCCTTCCTGTTTTTAGGGCCTACCGGGGTGGGTAAAACCGAGC TTTGTAAAACGCTGGCGAACTTTATGTTCGACGATGAAAACGCCATGGTGCGTATCGATATGTCCGAGTTTATGGAAAAA CACAGCGTATCCCGTTTGGTGGGGGCTCCTCCGGGTTATGTGGGTTATGAAGAAGGCGGTTATTTAACCGAAGCGGTGCG CCGCCGTCCGTATTCCGTGATTTTATTGGATGAAGTGGAAAAAGCCCATCACGACGTATTCAATATTTTATTGCAAGTAT TGGATGACGGGCGTTTAACCGACGGACAGGGCAGAACCGTAGATTTCCGCAATACCGTGGTGATTATGACATCAAACTTA GGATCGGATTTAATTCAGGAAAATAAAGATCTTGGTTATGAAGGCATGAAGGAAATCGTGATGTCGGTGGTCGGCCAACA TTTCCGTCCGGAATTCATCAACCGTATTGATGAAACCGTGGTATTCCATCCGTTAGCGAAAGAAAACATCAAGGCGATTG CACAAATCCAATTAGCCCGCTTAACCAAACGTATGGAGCAACACGGTTATGCAATTAACTTTAGCGAAACCTTGTTGGAT TTTATCAGCGAAGTCGGTTACGATCCGGTTTACGGAGCAAGACCGCTCAAACGCGCAATTCAGCAGGAAATCGAAAATCC GTTGGCACAACAAATTTTGTCCGGCAAATTATTACCGGCAAAACCTGTTACCGTGGATTACGAAGACGGCAAAGTGGTTG CGAAACAGTAA Protein sequence : MNIEKFTTKFQQALAEAQSLALGKDNQYIEPVHVLSALINQQDGSVAPILTSAGVNVGALKAELNSEINKLPQVSGNGGD VQISRQLLNLLNLCDKIAQRNNDKFISSELFLLAALEEKGSLGDLLKKCGAKKESLEQAIKTIRGGQSVNDQNAEESRQA LEKYTIDLTERAESGKLDPVIGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKGKRVLSL DMGALIAGAKYRGEFEERLKAVLKELAQEEGKVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYR QYIEKDAALERRFQKVFVDEPTVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASS IRMEIDSKPEPLDRLDRRIIQLKLEQQALKKEEDEASRKRLDMLEKELSEKEREYAELEEVWKSEKAALSGTQHIKAELE SARTQMEQARRAGDLNKMSELQYGTIPALEKQLAAADSAEGKEMSLLRNRVTDEEIAQVLSRATGIPVSRMMEGEKEKLL RMEEELHKRVIGQGEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFMFDDENAMVRIDMSEFMEK HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHHDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL GSDLIQENKDLGYEGMKEIVMSVVGQHFRPEFINRIDETVVFHPLAKENIKAIAQIQLARLTKRMEQHGYAINFSETLLD FISEVGYDPVYGARPLKRAIQQEIENPLAQQILSGKLLPAKPVTVDYEDGKVVAKQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 4e-155 | 46 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-104 | 42 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 9e-101 | 42 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 1e-100 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpA | YP_088975.1 | ClpA protein | VFG0079 | Protein | 2e-151 | 45 |
| clpA | YP_088975.1 | ClpA protein | VFG2076 | Protein | 2e-107 | 43 |
| clpA | YP_088975.1 | ClpA protein | VFG2084 | Protein | 1e-104 | 41 |
