|
Name : wcaJ (MS1492) Accession : YP_088684.1 Strain : Mannheimia succiniciproducens MBEL55E Genome accession: NC_006300 Putative virulence/resistance : Virulence Product : WcaJ protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG2148 EC number : - Position : 1482631 - 1483230 bp Length : 600 bp Strand : - Note : Sugar transferases involved in lipopolysaccharide synthesis DNA sequence : ATGATAAAACGCCTTTTCGATATTGTTGTCGCATTGATAGCATTGATTTTGTTTTCGCCCTTGTATTTGTTTGTGGCTTA TAAGGTAAAACAAAATTTGGGATCACCGGTGTTATTTAAACAAACCCGTCCCGGATTACATGGTAAACCCTTTGAGATGA TTAAGTTCAGAACAATGAAAGACGGCGTAGATGAAAACGGTAATATTTTGCCGGATGCGGAGCGCTTAACACCTTTCGGC AAAATGTTGCGCGCTACCAGTCTGGACGAGTTGCCGGAACTTTGGAATGTATTAAAAGGTGATATGAGTCTGGTGGGACC GCGTCCTCTACTGATGGAATATTTGCCGCTGTATAACGAAAGACAGGCTAAGCGCCATGAAGTGAAACCCGGAATTACCG GTTATGCACAGGTAAACGGTCGCAATGCCATCAGTTGGGAGCAGAAATTTGAATTGGATGCCTGGTATGTTGAACATCAA TCCTTGTGGCTGGATTTGAAAATTATCGCAAAGACCATCCAAAAAGTGATCGCAAAAGACGATATTAATGCGGCAGACGA TGCCACCATGCCTAAATTTGAAGGGAATAAAAAATCATGA Protein sequence : MIKRLFDIVVALIALILFSPLYLFVAYKVKQNLGSPVLFKQTRPGLHGKPFEMIKFRTMKDGVDENGNILPDAERLTPFG KMLRATSLDELPELWNVLKGDMSLVGPRPLLMEYLPLYNERQAKRHEVKPGITGYAQVNGRNAISWEQKFELDAWYVEHQ SLWLDLKIIAKTIQKVIAKDDINAADDATMPKFEGNKKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1N | AAL26667.1 | type 8 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-29 | 46 |
| SSP0070 | YP_300160.1 | capsular polysaccharide synthesis protein | Not tested | SCC15305cap | Protein | 5e-28 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| wcaJ | YP_088684.1 | WcaJ protein | VFG1369 | Protein | 6e-23 | 45 |
| wcaJ | YP_088684.1 | WcaJ protein | VFG1309 | Protein | 2e-30 | 43 |
