Gene Information

Name : ompR (MS1246)
Accession : YP_088438.1
Strain : Mannheimia succiniciproducens MBEL55E
Genome accession: NC_006300
Putative virulence/resistance : Virulence
Product : OmpR protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1245463 - 1246143 bp
Length : 681 bp
Strand : -
Note : Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain

DNA sequence : 
GTGAGTAGCATGATGATGAGAATATTGTTAATTGAAGATGATGCATTAATCGGTAACGGCATCAAAGTGGGATTAACCAA
ATCAGGCTTTTCAGTGGATTGGTTCACAGACGGAAAAACCGGTTTACAGGCGATAAAATCCGCACCTTATGATGCTGTTG
TATTAGATCTAACCTTGCCCGGTATGGACGGTATGGATATTCTGCAACAATGGCGTAATGAAAAAATTGACACGCCGGTG
TTAATATTAACCGCCCGCGATACCTTGAATGATCGGGTTACCGGTTTGCAACGCGGTGCGGATGATTATTTATGCAAACC
TTTTGCCTTAGCGGAAGTCATTGCCCGCTTACAGGCGCTGATTCGTCGTCGCTACGGTCAGGCGAATCCTATCGTTGAAC
ACAGCTTAGTCAAATTTGATCCGAACAGTCGCAAAGTCAGCCTGCAAGGCAAAGACATTCCGTTAACCACCAGAGAATAT
AATTTGCTCGAATTATTTATGATGAATAAAGAGCGGGTGTTGTCCCGTTCGTTTATTGAGGAGAAATTATATAACTGGGA
CGATGAAGTAAGCAGCAACGCCCTTGAAGTGCATATTCATAATTTACGTCAAAAATTAGGTAAACAGTTTATTCGCACGG
TACATGGTGTCGGTTATGCCTTAGGTAAAAACGAAGAATGA

Protein sequence : 
MSSMMMRILLIEDDALIGNGIKVGLTKSGFSVDWFTDGKTGLQAIKSAPYDAVVLDLTLPGMDGMDILQQWRNEKIDTPV
LILTARDTLNDRVTGLQRGADDYLCKPFALAEVIARLQALIRRRYGQANPIVEHSLVKFDPNSRKVSLQGKDIPLTTREY
NLLELFMMNKERVLSRSFIEEKLYNWDDEVSSNALEVHIHNLRQKLGKQFIRTVHGVGYALGKNEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-40 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ompR YP_088438.1 OmpR protein BAC0487 Protein 3e-42 45
ompR YP_088438.1 OmpR protein BAC0638 Protein 2e-31 42
ompR YP_088438.1 OmpR protein BAC0347 Protein 5e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ompR YP_088438.1 OmpR protein VFG0473 Protein 6e-42 44
ompR YP_088438.1 OmpR protein VFG1390 Protein 2e-32 42