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Name : spoIVCA (BL02390) Accession : YP_081392.1 Strain : Bacillus licheniformis DSM 13 Genome accession: NC_006270 Putative virulence/resistance : Unknown Product : site-specific DNA recombinase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1961 EC number : - Position : 4174167 - 4175411 bp Length : 1245 bp Strand : + Note : - DNA sequence : ATGCACGAAATAAAACGTGTCGCAATTTACTGTAGAGTTTCTACCGAAGAGCAGGCAACGGAAGGATACAGCATATCTGC CCAATTACAAACTTTACGTCAATATACTCAGTTATATGGTTGGGAGATTGCAGAGGAATATGTAGATGAGGGAATAAGTG GAAAGAACATTAGCGGTCGCCCTGCAATGCAAAAACTTATTTCAGATGTTGAAAAGGATAAATTTCAAGCTGTTCTTGTT TGGAAGATCTCACGCCTATCACGAAATATGTTAGATACTCTCACTCTATTAGACAAATTCGAAGATTATGGAGTAAAGTT CATCTCTTACTCTGAAAACTTTGATACAGGCAGTCCAATTGGTCGTTTAGTTGTTCAACTAATGGCTTCCATTGCAGAAA TGGAGCGTAATACGTTATCTGAGAACGTTAAGCTCGGAATGAAACAGAGAGCATTAGAAGGTTCATGGAATGGAGGCGTT GTATTTGGCTACGATACAATTGAAAAAGAGCTTGTGATCAACAAAAAGGAAGCTGAGATTGTACAACAAATCTATCAACT ATATGCCAATGGTAAAGGCTTAAAGTCAATCGCAAACTACTTAAATAAAGCAGGTTACAGAACTAAACGGAATTGTTATT TTTCGATAAACGGTGTAGCTCAAATCTTAGACAATGTTATCTATAACGGGAAGATCAGTTGGTTAAAAGTTGAAAATTGG GATACAAAACGGAGGAGAGGGAAAAATCCAAATCCTATCCTTGTAGAAGGACAGCATGAAGCCATTATTTCCGATGAATT ATGGAGTATGGTACAAGCAAGGCGGAAAAGTAAATCATTTAAACAAAGGCAATCTAATGAACCATTTTTACTTAGCAGTC TTTTACGTTGCCCCGATTGTGGTCAAGGTATGGTTCCTGCCATTACAACAAATAAACGAAAGGATGGAACAAAGAAGAAA TATCGTTATTATGTTTGCTCTAACTTTCATAACAAAGGTTCATCTGCATGTAGAGCAAATTCAATAAAAGCATATGATGC AGAATACGAAGTAATTAATAAGATTGAGAAGATCCTTTCCAACCAAAATCAGTTATTCTCTAAACTTCAATCTATAAATA CTACTTCGATTGAATCTTTAAACCAACTCAATAGTGAATTGAAACAATTAGAAAATCGCCTATCAGAAATACAAGAGTAC AGAATCGTTACTTGGAAGCATTTGAGCAAAAGACCTTACCAATAG Protein sequence : MHEIKRVAIYCRVSTEEQATEGYSISAQLQTLRQYTQLYGWEIAEEYVDEGISGKNISGRPAMQKLISDVEKDKFQAVLV WKISRLSRNMLDTLTLLDKFEDYGVKFISYSENFDTGSPIGRLVVQLMASIAEMERNTLSENVKLGMKQRALEGSWNGGV VFGYDTIEKELVINKKEAEIVQQIYQLYANGKGLKSIANYLNKAGYRTKRNCYFSINGVAQILDNVIYNGKISWLKVENW DTKRRRGKNPNPILVEGQHEAIISDELWSMVQARRKSKSFKQRQSNEPFLLSSLLRCPDCGQGMVPAITTNKRKDGTKKK YRYYVCSNFHNKGSSACRANSIKAYDAEYEVINKIEKILSNQNQLFSKLQSINTTSIESLNQLNSELKQLENRLSEIQEY RIVTWKHLSKRPYQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccrB | YP_042165.1 | site-specific recombinase | Not tested | SCC476 | Protein | 2e-63 | 43 |
| ccrB3 | YP_005754051.1 | site-specific recombinase CcrB3 | Not tested | Type-XI SCCmec | Protein | 2e-65 | 43 |
| ccrB3 | BAB47597.1 | cassette chromosome recombinase B3 | Not tested | Type-III SCCmec | Protein | 2e-65 | 43 |
| ccrB3 | BAB46972.1 | cassette chromosome recombinase B3 | Not tested | Type-IIIinv SCCmec | Protein | 2e-65 | 43 |
| SE0056 | NP_763611.1 | cassette chromosome recombinase B | Not tested | SCCpbp4 | Protein | 1e-60 | 43 |
| ccrB4 | DAA01835.1 | cassette chromosome recombinase B type 4 | Not tested | SCCpbp4 | Protein | 8e-61 | 43 |
| ccrC | BAD24834.1 | cassette chromosome recombinase C | Not tested | Type-V SCCmec | Protein | 3e-62 | 42 |
| SAPIG0035 | YP_005732845.1 | cassette chromosome recombinase C7 | Not tested | Type-V SCCmec | Protein | 1e-61 | 42 |
| unnamed | ACL99832.1 | cassette chromosome recombinase C8 | Not tested | Type-V SCCmec | Protein | 8e-62 | 42 |
| ccrC8 | BAG06191.1 | cassette chromosome recombinase C8 | Not tested | Type-VII SCCmec | Protein | 8e-62 | 42 |
| ccrC | YP_251971.1 | casette chromosome site specific recombinase CcrC | Not tested | SCCmec | Protein | 2e-61 | 42 |
| unnamed | ACL99844.1 | cassette chromosome recombinase C2 | Not tested | Type-V SCCmec | Protein | 2e-60 | 42 |
| ccrC2 | BAG06212.1 | cassette chromosome recombinase C2 | Not tested | Type-VII SCCmec | Protein | 2e-60 | 42 |
| SAPIG0050 | YP_005732860.1 | cassette chromosome recombinase C | Not tested | Type-V SCCmec | Protein | 1e-61 | 42 |
| unnamed | BAB47672.1 | site-specific recombinase | Not tested | Type-III SCCmec | Protein | 7e-62 | 41 |
| unnamed | BAC53834.1 | site-specific recombinase | Not tested | SRImec-III and SCCmec-III region | Protein | 7e-62 | 41 |
| SSP0046 | YP_300136.1 | cassette chromosome recombinase C | Not tested | SCC15305cap | Protein | 5e-61 | 41 |
