Gene Information

Name : STH1933 (STH1933)
Accession : YP_075762.1
Strain : Symbiobacterium thermophilum IAM 14863
Genome accession: NC_006177
Putative virulence/resistance : Virulence
Product : iron ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2075409 - 2076233 bp
Length : 825 bp
Strand : -
Note : -

DNA sequence : 
ATGCTGCGCATCGAATCGCTCGCCGTGGGCTATGGCGGCGAGCCGGTCCTCAACGGGCTGGACCTGGCCGTCGCCCGGGG
CGAGTTCCTGGTGGTGGTGGGCCCCAACGGCAGCGGCAAGTCCACCCTGGTGCGGGCCGTGACCGGGGCGCTGCCCCCGA
CGGAGGGGCGGATCCTGCTGGACGGCCGGGATCTGCGCGGCCTGCGGCCCCGGGAGGTGGCCCGGACGCTGGCCGTGGTG
GCCCAGGACACGTCCGTGGGGTTCCCCTTCACCGTCGAGGAGATCGTCGCCCTGGGGCGCATCCCGCACCTGCCGCCGCT
GCGCAGCGAGACCCCGCGCGACCGGGCGGCCGTGGAGCGGGCCATGCGGCTGACCGGCACCCAGCCCCTGGCCGGCCGGC
TGGTCACGGCGCTCTCGGGCGGTGAGCGGCAGCGGGTGATGGTGGCCCGAGCCCTGGCCCAGGAACCGCGCCTGTTGATC
CTGGACGAGCCCACTGCCCACCTGGACATTGCCCATCAGGTGGGGCTGCTGGATCTGGTCCGGCGTCTGAACCGGACCGA
GGGGCTGACGGTTCTGGCGATCCTGCACGACCTGAACCTGGCGGCGCTGTACGCGGACCGGCTGGTGATGCTGAGGGGCG
GGCGCGTGTGGGCCGACGGCCCGCCCGCGGAGGTGCTCACCGAGGCCAACATCCTCACCGTCTACGGCAGCCGGGTTCGG
ATCGTCCGCCATCCCAGCGCTGGCCAGCCGCAGGTCATGCTGCTCTCGAGGGAGGTTGCGGCGCCGGCCCAGCCGCTGGA
GCCGGTCAGCGCCGGCAGCGACTAG

Protein sequence : 
MLRIESLAVGYGGEPVLNGLDLAVARGEFLVVVGPNGSGKSTLVRAVTGALPPTEGRILLDGRDLRGLRPREVARTLAVV
AQDTSVGFPFTVEEIVALGRIPHLPPLRSETPRDRAAVERAMRLTGTQPLAGRLVTALSGGERQRVMVARALAQEPRLLI
LDEPTAHLDIAHQVGLLDLVRRLNRTEGLTVLAILHDLNLAALYADRLVMLRGGRVWADGPPAEVLTEANILTVYGSRVR
IVRHPSAGQPQVMLLSREVAAPAQPLEPVSAGSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 4e-33 44
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-33 42
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-33 42
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-32 41
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-32 41
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-32 41
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STH1933 YP_075762.1 iron ABC transporter ATP-binding protein BAC0164 Protein 8e-34 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STH1933 YP_075762.1 iron ABC transporter ATP-binding protein VFG0925 Protein 7e-42 43
STH1933 YP_075762.1 iron ABC transporter ATP-binding protein VFG1042 Protein 8e-34 42