Gene Information

Name : STH1507 (STH1507)
Accession : YP_075336.1
Strain : Symbiobacterium thermophilum IAM 14863
Genome accession: NC_006177
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1643967 - 1644764 bp
Length : 798 bp
Strand : +
Note : -

DNA sequence : 
ATGTGGGAGCAATGCACGGCGCAAGGCGAACTGCCGGTGGTGGTGCGCGGCCTGACGGTGGCCTACCAGCGCCGCCCGGT
GCTGGAGGACGTGAACCTGTCCCTGCCGCCCGGGCTGCTCATCGGCGTGATCGGACCCAACGGGGCCGGCAAGTCGACGC
TGCTGAAGGCCATCCTGGGGCTGGTTCCCCGGGTCGCCGGGGAGGTGTGGATCTACGGCCGGCCCGTGGCGGAGGCCCGG
CGCGCGGTGGGCTACGTGCCGCAGCGGGCGGCGGTGGACTGGGACTTTCCCACCGACGTGCTGGACGTGGTGACGATGGG
CCGGTATGGCCACCTGGGGCTCTTCCGCCGGCCGGGCGCGCGGGAGCGCGCCGTCGCGATGGAGGCGCTGGAGAAGGTCG
GGATGGCCGACCTGGCCCACCGGCAGATCGGACAGCTCTCCGGTGGGCAACAGCAGCGGGTCTTCCTCGCCCGGGCCCTG
GCGCAGGACGCCCGGATCTACTTCATGGATGAGCCGTTCGCCGGCGTGGACGCCGCGACCGAGCGGGCGATCATCGGGGT
GCTCCACGAGATGAAGGCCCGCGGGCGCACGGTGGTGGTGGTCCACCATGACCTGCAGACCGTGCGGGAGTACTTCGACT
GGCTCGTGTTCCTGAACGGACACGTGCTCGCCGCCGGCCCGGTGGAGCGGGTCTTCACACCGGAGAACCTGGCGCGCACC
TACGGCGGCCGGCTGGGCGGCCTCGCGCAGCTTCCCGCGGCGCCGCAGGCCGCGGGCCGGGGGTGGGGAGGGGACTGA

Protein sequence : 
MWEQCTAQGELPVVVRGLTVAYQRRPVLEDVNLSLPPGLLIGVIGPNGAGKSTLLKAILGLVPRVAGEVWIYGRPVAEAR
RAVGYVPQRAAVDWDFPTDVLDVVTMGRYGHLGLFRRPGARERAVAMEALEKVGMADLAHRQIGQLSGGQQQRVFLARAL
AQDARIYFMDEPFAGVDAATERAIIGVLHEMKARGRTVVVVHHDLQTVREYFDWLVFLNGHVLAAGPVERVFTPENLART
YGGRLGGLAQLPAAPQAAGRGWGGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 5e-49 47
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 4e-49 47
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-47 46
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-47 46
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 5e-47 46
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 5e-47 46
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-47 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STH1507 YP_075336.1 ABC transporter ATP-binding protein BAC0400 Protein 4e-65 62
STH1507 YP_075336.1 ABC transporter ATP-binding protein BAC0350 Protein 6e-48 46
STH1507 YP_075336.1 ABC transporter ATP-binding protein BAC0440 Protein 1e-47 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STH1507 YP_075336.1 ABC transporter ATP-binding protein VFG0526 Protein 6e-48 46