Name : hofB (YPTB0706) Accession : YP_069247.1 Strain : Yersinia pseudotuberculosis IP 32953 Genome accession: NC_006155 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 845082 - 846620 bp Length : 1539 bp Strand : - Note : similar to Yersinia pestis YPO3426 hofB, hopB; type II secretion system protein (99.8% evalue=0); Escherichia coli Z0117 hofB; integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (45.3% evalue=1.E-112) DNA sequence : ATGGCTGAATTTACAGTGTCCTCATTTGAAACAATTAGTGATGAATTACACCTTCTCTGTCGGCGTTATCGGGCAGTGGC ACTCACTCTTGATGGTAAAAGCCTTTCGATAGCTTCAGCCCAGACCGTTGATGAAGCGTTATTGACCGCGTTGCGTTTCA CATGTGGCCGTCAAGTCAGAGTGGAATATTGGCCCGAAGCCAAGATTGAACAATCATTGTATTTGGGGAGCCCGACGAAA AATAACCTAAACAGTAGTATTAACAACGGGCTAAATAGCGCGTTGTTATCCCAAAAGGGAGGTGATCCGTCGCGAGTAAA ACCGCACAATCAGCAGCAACAGACAATAGATGATACTGTGTTTGATAATGAGAGTGACACACCCGTCATTCAATTCATAA CCCAGACGCTAAGTCTAGCCATTCAAAAACGCGCTTCAGATATCCATTTTGAGCCTTATCAACACCACTATCGTGTTCGT TTAAGAATTGATGGTGTGTTGCATGAATTCACCCCACCCGAGGCCGAATGGGCAGCTCGGATTAGCAGTTGCCTGAAGGT CATGGCGAAATTAAATATTGCTGAACGGCGATTACCACAAGATGGTCAACTAACCTTACCCTTTGGTGATTCACACTATT CAATGCGGATAGCGACTCTCCCTACGCAATATGGTGAAAAAGTGGTATTGCGTATTCTTCAAATACAACAGCAAACCACG TTAGAAAAGCTGGGGATGACGGATGCGGCACTGAAACAATTAACACAGGCATTATCAGCACCACAAGGGCTGATTCTGGT CACCGGCCCTACCGGTAGTGGCAAAACCATTACGTTATATTGCAGTTTAGCGCGGCTGAATCAGACACAAAGAAACATCT GTAGCGTCGAAGATCCTATTGAGATCCCCGTCAATGGCATTAACCAAACCCAGGTAAACAGCAAGATCGGTCTGGATTTC TCTCGAATACTACGAGCCATCCTACGTCAGGACCCTGATGTCATTATGGTTGGTGAAATTCGTGATAATGAAACCGCCAG TATCGCAGTTAACGCGGCCCAGACCGGGCATTTGGTCCTATCGACGCTGCACACTAACTCAACAGCAGAAACGCTGATAC GCATGGCACAAATGGGAATAGAACGCCATTTAATCGCCTCAAGTCTAAAACTCGTCATTGCTCAACGCTTGGTGCGCCGC CTATGTTTACATTGCCGCCAGGCTGCATCTCACCCCTTTATTCCACCAGCTCACATAAGGTCTGGTCCGATCCAACACTA TCTAGCTGTAGGTTGTGAGCATTGTTGTACGGGTTATTATGGCCGAACGGGTATTTATGAAATGCTGAGTGTAACGCCGC AGATTCAGCAAGCCATACTCAATAATGCCAGCCCTGTAAAACTGGTACAAATTGCCCAGAAGCAAGAACAAACAGCCTTA CTCTGCTCAGGTTTAGCTTTAATCGAAAAAGGCATCACTACCCTTAGTGAAATTAATCGTGTTGTGGGCTTCGTAGCAGA AACAGAGGTCACCTCTTGA Protein sequence : MAEFTVSSFETISDELHLLCRRYRAVALTLDGKSLSIASAQTVDEALLTALRFTCGRQVRVEYWPEAKIEQSLYLGSPTK NNLNSSINNGLNSALLSQKGGDPSRVKPHNQQQQTIDDTVFDNESDTPVIQFITQTLSLAIQKRASDIHFEPYQHHYRVR LRIDGVLHEFTPPEAEWAARISSCLKVMAKLNIAERRLPQDGQLTLPFGDSHYSMRIATLPTQYGEKVVLRILQIQQQTT LEKLGMTDAALKQLTQALSAPQGLILVTGPTGSGKTITLYCSLARLNQTQRNICSVEDPIEIPVNGINQTQVNSKIGLDF SRILRAILRQDPDVIMVGEIRDNETASIAVNAAQTGHLVLSTLHTNSTAETLIRMAQMGIERHLIASSLKLVIAQRLVRR LCLHCRQAASHPFIPPAHIRSGPIQHYLAVGCEHCCTGYYGRTGIYEMLSVTPQIQQAILNNASPVKLVQIAQKQEQTAL LCSGLALIEKGITTLSEINRVVGFVAETEVTS |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-72 | 45 |
gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-72 | 45 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
hofB | YP_069247.1 | hypothetical protein | VFG0112 | Protein | 3e-84 | 48 |
hofB | YP_069247.1 | hypothetical protein | VFG2426 | Protein | 9e-75 | 46 |
hofB | YP_069247.1 | hypothetical protein | VFG2048 | Protein | 3e-74 | 46 |
hofB | YP_069247.1 | hypothetical protein | VFG0182 | Protein | 2e-70 | 46 |
hofB | YP_069247.1 | hypothetical protein | VFG0233 | Protein | 4e-76 | 46 |