Gene Information

Name : yagB (YPTB3867)
Accession : YP_072345.1
Strain : Yersinia pseudotuberculosis IP 32953
Genome accession: NC_006155
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4618147 - 4618482 bp
Length : 336 bp
Strand : -
Note : similar to Escherichia coli b0266 yagB; hypothetical 13.2 kD protein in perR-argF intergenic region (74.7% evalue=5.E-38); Escherichia coli JW0259 yagB; Hypothetical protein (74.7% evalue=5.E-38)

DNA sequence :
ATGCCATCAATCACTACCCCAGCCTGGGGACTTAAACGCAACGTCACTCCGCAGTTTGGTGCCCGTCTGGTACAGGAAGG
CGACCGACTACATTTTCTAGCCGACCGTGCCGATATCAACGGAACCTTCAGCGAAGTGCAGGTACGTGATTTAGATAACG
CCTTCCCGCAGTTCATCAACTACCTGGAACTGATGCTGCTCTCCGGTGAGCTCAACCCTCGCCACCAGCACTGTGTCACG
TTGTATCGCAATGGCTTGACCTGTGAGGCCGATAGCCTGGGATCACACGGTTATGTGTATCTCGCTATTTATCCTACTCC
CCAATCAACTGCATAA

Protein sequence :
MPSITTPAWGLKRNVTPQFGARLVQEGDRLHFLADRADINGTFSEVQVRDLDNAFPQFINYLELMLLSGELNPRHQHCVT
LYRNGLTCEADSLGSHGYVYLAIYPTPQSTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yeeU NP_838486.1 structural protein Not tested SHI-1 Protein 4e-30 70
yeeU NP_708772.1 structural protein Not tested SHI-1 Protein 4e-30 70
unnamed AAK00481.1 unknown Not tested SHI-1 Protein 2e-30 70
ECO103_3591 YP_003223448.1 hypothetical protein Not tested LEE Protein 4e-28 70
unnamed CAD66206.1 hypothetical protein Not tested PAI III 536 Protein 1e-29 69
aec75 AAW51758.1 Aec75 Not tested AGI-3 Protein 1e-29 69
yeeU YP_853121.1 antitoxin of the YeeV-YeeU toxin-antitoxin system Virulence PAI IV APEC-O1 Protein 9e-29 69
yeeU AAZ04460.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 7e-30 69
yeeU YP_854324.1 hypothetical protein Not tested PAI I APEC-O1 Protein 1e-29 69
yeeU CAD42100.1 hypothetical protein Not tested PAI II 536 Protein 4e-29 68
yeeU ADD91700.1 YeeU Not tested PAI-I AL862 Protein 1e-28 68
yeeU CAE85203.1 YeeU protein Not tested PAI V 536 Protein 9e-30 68
c5150 NP_756998.1 hypothetical protein Not tested PAI II CFT073 Protein 7e-29 68
Z1220 NP_286755.1 structural protein Not tested TAI Protein 2e-27 67
Z1658 NP_287161.1 structural protein Not tested TAI Protein 2e-27 67
unnamed AAL08477.1 unknown Not tested SRL Protein 1e-27 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yagB YP_072345.1 hypothetical protein VFG0662 Protein 1e-30 70
yagB YP_072345.1 hypothetical protein VFG1681 Protein 6e-30 69
yagB YP_072345.1 hypothetical protein VFG1619 Protein 2e-29 68
yagB YP_072345.1 hypothetical protein VFG1068 Protein 5e-28 64