Name : YPTB0322 (YPTB0322) Accession : YP_068868.1 Strain : Yersinia pseudotuberculosis IP 32953 Genome accession: NC_006155 Putative virulence/resistance : Virulence Product : secretion system apparatus protein SsaV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 387685 - 389733 bp Length : 2049 bp Strand : + Note : with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system DNA sequence : ATGAGTAAGTCAGCACTGGTGCGGGGTTTGACGATGATCACCGCGCGGCAGGATATTTTTTTAGCGGTCATGTTGCTGGT GGCGGTCTTTATGATGATCCTGCCACTGCCTACGACGATGGTGGATTTACTGATCGCCATCAATCTTGCCTTCTCCGTCA TTCTCTTAATGATCTCGATCTATCTGCGCGATCCTTTGGAGTTCTCCGTCTTCCCGTCATTACTGTTGATCACCACCCTT TATCGATTGGCACTGACGATCAGCACCACGCGACTGGTGCTGTTGCAACATGATGCCGGTGAGATTGTCGAGGCATTCGG TCAGTTTGTCGTGGGCGGTAATCTGGCCGTCGGGATGATCATTTTTACCATTATCACGGTGGTCCAATTTATCGTGATTA CCAAAGGTTCAGAGCGGGTTGCTGAGGTCAGTGCGCGCTTCTCACTTGATGGTATGCCGGGTAAGCAGATGAGCATCGAC GGCGACATGCGTGCGGGTGCGATCGATTCGGTCGAAGCTAAACGGCTACGGGAGCGGGTACAAAAAGAGAGCCGCTTATT TGGTGCTATGGACGGTGCCATGAAGTTTGTTAAAGGGGATGCCATCGCTGGGATCATTGTCATTCTGGTCAATATCATTG GCGGTATCACTATTGGTGTGATGCAACACAAGATGTCCGCGGAAGAGGCGATGAATACCTACGCGGTATTATCGATAGGC GATGGATTGTGCGCCCAAATCCCTTCATTACTGATCTCGATTACCGCCGGGATTATTGTTACCCGGGTTCCTGGCAGCAA CAAACAGAGTCTGGCGAATGAGTTGGCGGTGCAGGTGGGGCGTCAACCGGATGCGCTGTGGTTAGCTGCCGCTATTCTGA CGGTGTTCGCCCTGTTACCCGGCTTCCCGTTCCTGATCTTTATCACTTTGGCGGCCGCGGTTGCGGCTCCGGCTTTTTTA CTTTATCGGAAGAACCGGCGGATATCGCAGGATGGTCGCGCAAATGGAGGCGGTGAAGAGGGGGCGGCCACGGGGCAGCG TATGACGCCTGGTGCCGTACCGCTGATGCTGCACTGTGCATCAAATTTACATCACCCGCATTTAGGGCGCGATATTGATG GCCTACGCTGGCGCTGGTTTGAGCATCTCGGTGTGCCATTGCCTGAGGTGGAGATCCGCTGTGATCCTACATTGGCAGAA AATACCTTATCGGTGCAGGTGTATCAGGAGCGGGTGCTGGAGGTTGTGTTACCGCCCGACAGCTTGTTACTGACACGGCC TTGCTCATCGTTAGTAACGAACAATCAGGCATTGGGCGCGAAGATGGGGTCATTTGATTGGCTGGATGCTAAACAGGCTA TGCAAGCCAGAACCTTGGGTATCCCTTACGTGGAGGGGCATCAGCGGATCATCACCTGTCTGACCAGGGTGTTTGAACGG TACACCGCCGAATTTATCGGCGTACAGGAGACTCGCTACCTGATGGATGCCATGGAAGGGCGCTATGGTGAGTTAGTGAA AGAGCTACAACGGCAGATACCCGTCGGTAAAGTGGCTGAAATATTACAACGGCTGGTTGAGGAAAATATTTCCATTCGCG ATTTACGGACTATTTTCGGCGCGTTGGTGGTTTGGGCACCGAAAGAAAAAGATATCGTGATGCTCACCGAATATGTCCGT ATCGCCTTGCGCCGTCATTTGTGCCGTCGCTTTAGTCACAATAAAACCTGGATATCAGTATTACGCCTCGGTGATGGGGT GGAGCATCTGATCCGCGACTCTATCCGCCAGACATCATCAGGCACTTACTCCGCACTGGAGGAGAGGCAATCCCTCTTGA TCCTCAACAAAATAAAAAACGCATTTGCTGAAAACCAGGATGCGGTATTGCTTACCACCCTCGATGTTCGTCGCTTTGTC CGCAAAATTATTGAGCGGGATCTCTTCGTGCTACCGGTACTTTCCTGGCAGGAACTGGGCGATGAAATGAATCTCAAGGT GGCGGGCACCATTGAACTGATTGGCGATGAACTTGATGAAACTGCCTGA Protein sequence : MSKSALVRGLTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSLLLITTL YRLALTISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMIIFTIITVVQFIVITKGSERVAEVSARFSLDGMPGKQMSID GDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAIAGIIVILVNIIGGITIGVMQHKMSAEEAMNTYAVLSIG DGLCAQIPSLLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLAAAVAAPAFL LYRKNRRISQDGRANGGGEEGAATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAE NTLSVQVYQERVLEVVLPPDSLLLTRPCSSLVTNNQALGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVR IALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQDAVLLTTLDVRRFV RKIIERDLFVLPVLSWQELGDEMNLKVAGTIELIGDELDETA |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 0.0 | 99 |
ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 6e-159 | 58 |
ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 4e-159 | 58 |
ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 9e-159 | 58 |
ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 9e-159 | 58 |
ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 6e-159 | 58 |
escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 2e-124 | 49 |
escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 1e-124 | 49 |
escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 8e-125 | 49 |
escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 7e-124 | 49 |
escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 8e-125 | 49 |
escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 2e-124 | 49 |
escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 1e-124 | 49 |
escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 4e-123 | 49 |
ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 4e-123 | 49 |
escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 3e-123 | 49 |
escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 3e-123 | 49 |
escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 1e-123 | 49 |
escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-120 | 49 |
escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-120 | 49 |
unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 2e-122 | 48 |
lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-121 | 46 |
invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 1e-85 | 42 |
hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 8e-89 | 41 |
hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 7e-89 | 41 |
ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 4e-92 | 41 |
hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 8e-87 | 41 |
hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 4e-81 | 41 |
hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 2e-91 | 41 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
YPTB0322 | YP_068868.1 | secretion system apparatus protein SsaV | VFG0514 | Protein | 3e-159 | 58 |
YPTB0322 | YP_068868.1 | secretion system apparatus protein SsaV | VFG0729 | Protein | 7e-124 | 49 |
YPTB0322 | YP_068868.1 | secretion system apparatus protein SsaV | VFG0813 | Protein | 2e-123 | 49 |
YPTB0322 | YP_068868.1 | secretion system apparatus protein SsaV | VFG0064 | Protein | 3e-126 | 48 |
YPTB0322 | YP_068868.1 | secretion system apparatus protein SsaV | VFG0198 | Protein | 2e-104 | 45 |
YPTB0322 | YP_068868.1 | secretion system apparatus protein SsaV | VFG0384 | Protein | 2e-117 | 45 |
YPTB0322 | YP_068868.1 | secretion system apparatus protein SsaV | VFG2126 | Protein | 4e-95 | 42 |