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Name : YPTB0311 (YPTB0311) Accession : YP_068857.1 Strain : Yersinia pseudotuberculosis IP 32953 Genome accession: NC_006155 Putative virulence/resistance : Virulence Product : two-component sensor/regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0642 EC number : - Position : 377880 - 380699 bp Length : 2820 bp Strand : - Note : similar to Yersinia pestis YPO0256 two-component sensor/regulator (98.8% evalue=0); Salmonella typhi STY1728 ssrA, spiR; two-component sensor kinase (44.1% evalue=0) DNA sequence : ATGGGCAAAGCATCATCACTTGTCACTCGATTGACATTATTACTGGGCGTCACACTAACCGTTATTTGGTTAATATTAAT CGCAACAACAGCATTCTTTTCATATGAAAATACACGTCAAATATTAATCAATGAGTTAACACATATGGCATCGATGCGGG CAGACTTAAGTAATCACCAGTTTGAAGGAGCTGAACGTGATGCAGCCTCGTTAATAAGCCGACGAGAAAGCCTCCAGAGC ACCTCACCGTTGCCTGAAATATCGATAAAACATTATGATAGCTGCTATATTCCTTTTAATCTGGACAGCTGTAATATTAA CCAACATAAAAATGATCTGTGGATAATTCAAGCGTATGGCACCGCCGGACAAACTTATTATCTCGACAGTTTTATTATCA AACAAAAAGAGGGGATTGTGTTATTTCCACCCCAAAAATCATCGAGTGATTACCTAAATCAACGGCGCAAAGATTTACTT TTGCTCCCCAAATTCCCTACTCACAATAATATCTATTGGGGAGCCCCCACCTATACGCCTCAAGGTGGCTGGCATGTTTC TGTCGCGGTGTGTGATAAAGTGGGCACCTTGGCTGGCTTCGCCTTAAAACTGAATGATCTCATCGCCTATAATCACCCTG TCGAGCAAAGAGACATTAATTTATTGTTGGATAAGAATGGTGAATTATTACCTATTTCCCAGCAAGCAACATCATCAAAT CAACTACATGAAATTCTTAACCAACTCAAAAACAGTAAATTACACGATGGCTGGCAGCAAACTCCCGACTATTTGGTATT ACGCACCCAATTGAAAGGGCCGGGTTGGCAGCAATTAGTTATTTATCCACGAATAGGCTTTGCCTGGGAGGCACTGAAAC CCGCCTTATATCAACTCCCTTTCGCTCTGGTTATTTTGCTGTTACTCACGTCAGTGCTGTCACTGCTGCTGCGATATTAT CTGGCGATCCCTTTGTGGAATTTCATCAATATCATTGGCGCTACCGGGCCACAGGCAATGGAACCCCGACTTCCCATAAA CCGAATAGATGAATTAGGGCATATTGCCCGCGCTTACAATAACTTACTGGATACGTTGAACGAACAATATGACACCTTAG AAATGAAAGTGAAGGAGCGTACTCTGGCTCTGGCAAAAGCCAAACGAGCTGCTGAGCAGGCTAACCGCCGTAAAAGCGAC CATCTGACCACGATAAGCCATGAAATCCGTACACCGCTCAACGGGGCGTTGGGGGCGGTTGAATTATTACAAAATACACC ACTGGATGCTGGCCAAATGAGGTTAGCGGAAACGGCTCACCAATGTTCGTTGTCACTGCTCGCGATCATTAACAACCTGT TAGATTTTTCACGTATTGAATCAGGGCAAATGACACTGTCGCTGGAGAAAACGGCCCTACTGCCTTTACTGGATCAGGCG ATGTTAACCATTCATAGCCAGGCACTGAGTAAGTCATTAGCGCTGTCCACGTTTATCAGTGCCGATATCCCGCTGGAACT TGAGCTGGATACACTGCGCTTAAGACAGATTCTGGTTAATTTATTAGGTAATGCCGTTAAATTCACACCACAGGGCCGTA TTCAACTCAGGGTCAGGCGTCAAAACCAAACGCTTTGTTTTACCGTTGAGGACACCGGTTGTGGTATTGACGTGCAACAC CAACAAACAATATTCCAACCTTTTATGCAGACCAGTGACCATGAACAAGGAACGGGTTTGGGGCTGGCTATCGCAGATAA TCTGGCCAAAATGATGGGAGGGCACCTGACAGTATTCAGTGAACCGGGTCAAGGTAGCTGTTTTTCATTATGCCTCCCCT TCAATGCAATCACCCCACCCATGCCTTTTCATGGCGAGCTATTCGCACCACAGCGCTTACACGCCCAATTATCAGCCTGG GGCATGACCTGCCAGCCAGAATTAGCTAATCAGCCATCACGGTACTTTGTGGATAACGCATTGTGTTACTTGCCCGGCCG GTTATACGCCAACCTGAAGCAATATCTACAAGGTGCTGAGACTGAGGTGCTAAAGAGCCTTCCGCTGCAACCTTGGCAAA TGCACATTCTGCTGGTTGATGACTCCGAAACGAATCGCGATATTACCGGAATGATGTTGCAGCAACTGGGACATCAGGTC ACGCTGGCAGACAGTGGCACAACCGCATTGGCGATTGGCCGCCAACACCGTTTCGATTTAGTGCTAATGGATATTCGAAT GCCTGTCCTGGACGGGCTGGCCACCACAGCACGCTGGCGTCATGATCCGGCGAACATTGATAGCCACTGCATGATCACCG CCCTGAGCGCCAATGCCAGCCCGGATGAGCAAATCAAAACCAGTCAGGCGGGGATGAACCACTACCTTTCCAAGCCTGTC ACCCTCGGCCAATTGGCTGAAATGTTAGATCTGACCGCACAATTCCAACTTGAACGTGGGGTCGATCTATCGCCACAACT CTCCGAGCCTCAGCCATTACTGGATCTCGCGGATAGCGCGTTGTCCCTGAAACTTTATCAATCACTGCAAGTATTAATTC AACAGGCCAAAGACGCTATTGAGAACTTGCCCGTATTATCCCATACGCTTCACACCATAAAAGGCTGTGCCGGGCAAGCT GGGCTAATTGAATTACAAGATGCGGTCATTCAATTAGAACACGCTCTCGATACTCATGAAACGCTGACACAGCAAGATAT CATTCAACTTGATGAAATAATTCATGTGCTGCTACAGCCCCCCACTACCTGCGAATCCACGTTTATCATCAGCCAGGGCC AGTCCCTTATGGTTAAATAA Protein sequence : MGKASSLVTRLTLLLGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQS TSPLPEISIKHYDSCYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLL LLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRIGFAWEALKPALYQLPFALVILLLLTSVLSLLLRYY LAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALAKAKRAAEQANRRKSD HLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA MLTIHSQALSKSLALSTFISADIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQH QQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAW GMTCQPELANQPSRYFVDNALCYLPGRLYANLKQYLQGAETEVLKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV TLADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPV TLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQA GLIELQDAVIQLEHALDTHETLTQQDIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0256 | YP_002345336.1 | two-component sensor/regulator | Not tested | Not named | Protein | 0.0 | 99 |
| spiR | AAC44299.1 | SpiR | Virulence | SPI-2 | Protein | 9e-142 | 47 |
| ssrA | NP_456136.1 | putative two-component sensor kinase | Virulence | SPI-2 | Protein | 6e-149 | 45 |
| ssrA | NP_805063.1 | two-component sensor kinase | Virulence | SPI-2 | Protein | 2e-149 | 45 |
| ssrA | NP_460357.1 | sensor kinase | Virulence | SPI-2 | Protein | 1e-148 | 45 |
| ssrA | YP_216400.1 | secretion system regulator:sensor component | Virulence | SPI-2 | Protein | 2e-149 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YPTB0311 | YP_068857.1 | two-component sensor/regulator | VFG0493 | Protein | 5e-149 | 45 |
