Gene Information

Name : YPTB0310 (YPTB0310)
Accession : YP_068856.1
Strain : Yersinia pseudotuberculosis IP 32953
Genome accession: NC_006155
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 377235 - 377867 bp
Length : 633 bp
Strand : -
Note : similar to Yersinia pestis YPO0255 two-component response regulator (98% evalue=1.E-113); Salmonella typhimurium STM1391 ssrB; Secretion system regulator: transcriptonal activator, homologous with degU/uvrY/bvgA (54.6% evalue=3.E-57)

DNA sequence : 
ATGAATACTAAATTATTGATTGTCGACGATCATGAACTCATTATTCATGGCATCAAGAATATGCTGGCCGCCTATCCGCG
CTACCTGATTGTAGGCCAAGCAGATAATGGACTTGAAGTGTATAACTTGTGCCGCCAAACTGAACCTGACATGGTCATTC
TGGATTTAGGATTACCCGGTATGGATGGCCTTGATGTTATCATTCAGTTGCTTCGCCGTTGGCCAGCGATGAAGATCCTG
ACGTTAACCGCCCGCAATGAAGAACACTATGCCAGCAGAACATTCAACAGTGGAGCCTTAGGTTATGTGCTGAAGAAAAG
TCCCCAGCAAATCCTGATGGCAGCCATTCAAACCGTCGCAATAGGTAAACGTTATATTGACCCCGCCCTTGATGCCTCTA
TGGTAATAAAACTGACTCAAGGACCCGCTAATACTCCTACGGTTCTGACACCCCGCGAGCGGCAGATATTAAAACTTATC
ACCGAGGGATCGTGTAATCGGGTTATTGCTGCTCAACTTTCTATCAGCCAAAAAACCGTCGAAACACATCGGCTGAATAT
GATGAAAAAACTGGATGTACATAAAGTCGCAGAACTTATTCACTGGTCATACCGATTAGGCTTGAATGTCTAA

Protein sequence : 
MNTKLLIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLCRQTEPDMVILDLGLPGMDGLDVIIQLLRRWPAMKIL
TLTARNEEHYASRTFNSGALGYVLKKSPQQILMAAIQTVAIGKRYIDPALDASMVIKLTQGPANTPTVLTPRERQILKLI
TEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGLNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0255 YP_002345335.1 two-component response regulator Not tested Not named Protein 1e-87 99
ssrB YP_216399.1 secretion system transcriptonal activator Virulence SPI-2 Protein 3e-41 56
ssrB NP_456137.1 putative two-component response regulator Virulence SPI-2 Protein 2e-41 56
ssrB NP_805062.1 two-component response regulator Virulence SPI-2 Protein 2e-41 56
ssrB NP_460356.1 transcriptional activator Virulence SPI-2 Protein 2e-41 56
ssrB CAB09344.1 SsrB Virulence SPI-2 Protein 6e-36 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTB0310 YP_068856.1 two-component response regulator VFG0492 Protein 7e-42 56