Gene Information

Name : rhbC (YPTB3263)
Accession : YP_071756.1
Strain : Yersinia pseudotuberculosis IP 32953
Genome accession: NC_006155
Putative virulence/resistance : Virulence
Product : siderophore biosynthesis protein, IucA familly
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4264
EC number : -
Position : 3843612 - 3845384 bp
Length : 1773 bp
Strand : +
Note : similar to Sinorhizobium meliloti SMa2404 rhbC; RhbC rhizobactin siderophore biosynthesis protein (32.1% evalue=3.E-56); Anabaena all0394 hypothetical protein (28.9% evalue=1.E-53)

DNA sequence : 
ATGACTATCCCAGTAGAAACCTTAGCAACCGATGTGGCTGCTCAATGTTTCCTCAACGCGCTGATTCGTGAAACCCAGGA
CTGGCAGATCGTTCCGGCAGCGGGCCACCAACCGTACCCACAACTCCACATTCCTCTTTCTTCTTCACACGCTATCCACA
TTGCCTTATGCCATATCTCCCCAACACAGCATCATCACTATCTGTTCCCTGCCTACCTGCATCAGCAGGGTAATGATAGG
CAGGATGATGACACCCCGGTAAAACTCGGGATCGAACAGTTGGTGACGCTTCTGTTGGAGAAGCCAACGGTAAAAGGTGA
GCTGTCTGATGATGTGGTTGCTCGTTTCCGTCAACGGGTGCTAGAAAGTCATGATAATACTCAGCAAGCGATTAATATTC
GTCTGGATTGGCCGTCATTACGCGATAAACCACTTAATTTTGCCCAGGCAGAACAAGGATTACTGGCCGGCCATGCCTTT
CACCCGGCACCGAAATCCCATCAACCTTTTAATGAAAAACAGGCCCAGCGTTATCTGCCCGATTTTGCCTCCCGCTTCCC
ACTACGCTGGTTTGCAGTCGATAAACGCTACCTGTGCGGCGATAGCCTAAAGCTAACGCTACAACACCGGCTGCAACGCT
TTGCCAGCGAAAGCGCCCCACAATTACTCGCGTATTTTACCGATGACGTTTGGCTGCTCCCCATGCACCCCTGGCAAGCC
GATCACCTATTGAAACAAGACTGGTGCCAGCAATTAGTACAACAAAACGCGTTGCATGATCTGGGCGAAGCGGGTGAACG
CTGGCTACCCACCAGCTCTTCACGTTCACTGTACAGCCCGTCAAACCGCGACATGGTCAAGTTCTCACTCAGTGTGCGCC
TGACCAACTCAGTACGAACCCTGTCGGTAAAAGAGGCCAAACGCGGTATGCGCTTGGCACGTTTGGCTCAAACGCCCCGC
TGGCAAGAGCTGCAAGCGCGCTACCCGACTTTCCGTGTGATGCAGGAAGATGGTTGGGCCGGTTTGCGTTCAGCCGATTT
CACTCTTCAAGAAGAGAGTCTGTTGGTGCTACGTGACAACCTGCTATTCAGCCAACCCGATAGCCAGACCAATGTGTTGG
TCACCTTGACACAAGCCGCGCCCGATGGGGGGGACAGCCTGCTGGCCAGTGCTGTGCGTCGTTTGGCTGCCCGTCTGAAT
CTGCCATTGCAACAGGCCGCTTTCTGCTGGCTGGATGCTTACTGCCAGCACGTCTTATTGCCACTGTTCAGCACCGAGGC
TGACTACGGGCTGGTGTTGTTAGCGCATCAGCAAAATATTCTGGTGGAGATGCAGCAAGATCTGCCTGTCGGTATGTTGT
ACCGCGACTGCCAAGGGAGCGGCTTTACCCAGAGCGCGCTGCCGTGGTTGGCGGAAATTGGCGAAGCCGAAGCGGAAAAT
AGCTTTAGCGAACAGCAATTATTACGTTACTTCCCGTATTACCTGCTGGTGAACTCCAGCCTCGCGGTAACGGCTGCCTT
GGCTGCCGCAGGTTTCGACAGCGAGGAAAATTTGATGGTTCGTGTGCGTGACGCACTCAGCGCCCTGCGTACTTGCGCCA
AAAACACCTTATGTCTGGATTACGTACTTGATAGCCCACATTGGCACTGCAAAGGTAATTTCTTCTGCTATCTACACGAT
CACAACGAAAACACCATCGTTGATCCGGCAGTGATCTACTTCGATTTCGTTAACCCTCTGCACCAGGGGGTGATCCATGG
GGCCACACGCTAA

Protein sequence : 
MTIPVETLATDVAAQCFLNALIRETQDWQIVPAAGHQPYPQLHIPLSSSHAIHIALCHISPTQHHHYLFPAYLHQQGNDR
QDDDTPVKLGIEQLVTLLLEKPTVKGELSDDVVARFRQRVLESHDNTQQAINIRLDWPSLRDKPLNFAQAEQGLLAGHAF
HPAPKSHQPFNEKQAQRYLPDFASRFPLRWFAVDKRYLCGDSLKLTLQHRLQRFASESAPQLLAYFTDDVWLLPMHPWQA
DHLLKQDWCQQLVQQNALHDLGEAGERWLPTSSSRSLYSPSNRDMVKFSLSVRLTNSVRTLSVKEAKRGMRLARLAQTPR
WQELQARYPTFRVMQEDGWAGLRSADFTLQEESLLVLRDNLLFSQPDSQTNVLVTLTQAAPDGGDSLLASAVRRLAARLN
LPLQQAAFCWLDAYCQHVLLPLFSTEADYGLVLLAHQQNILVEMQQDLPVGMLYRDCQGSGFTQSALPWLAEIGEAEAEN
SFSEQQLLRYFPYYLLVNSSLAVTAALAAAGFDSEENLMVRVRDALSALRTCAKNTLCLDYVLDSPHWHCKGNFFCYLHD
HNENTIVDPAVIYFDFVNPLHQGVIHGATR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iucA NP_839223.1 siderophore biosynthesis protein Virulence SHI-2 Protein 2e-156 63
iucA NP_709454.2 siderophore biosynthesis protein Virulence SHI-2 Protein 2e-156 63
iucA AAD44746.1 IucA Virulence SHI-2 Protein 1e-156 63
iucA YP_002414046.1 aerobactin siderophore biosynthesis protein Virulence Not named Protein 1e-156 63
iucA AAK71631.1 IucA Virulence SHI-3 Protein 4e-139 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rhbC YP_071756.1 siderophore biosynthesis protein, IucA familly VFG0615 Protein 8e-157 63
rhbC YP_071756.1 siderophore biosynthesis protein, IucA familly VFG0940 Protein 4e-157 63
rhbC YP_071756.1 siderophore biosynthesis protein, IucA familly VFG1081 Protein 2e-139 59