Gene Information

Name : xerD (YPTB3167)
Accession : YP_071669.1
Strain : Yersinia pseudotuberculosis IP 32953
Genome accession: NC_006155
Putative virulence/resistance : Unknown
Product : site-specific tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 3724976 - 3725875 bp
Length : 900 bp
Strand : -
Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d

DNA sequence :
ATGAAACAGCAAGATAACCCGCTGATTGAACAATTTCTTGATGCTCTGTGGCTGGAACGAAATCTGGCAGAGAATACACT
GGCGTCATACCGTTTGGATTTACATGCGCTGGTTGGATGGTTGACACACCATAACAGTGATTTATTGCGCGCCAGCCCGC
AGGACTTGCAATCCTTCCTTGCTGAACGGATCGAGGGTGGCTATAAAGCCACCAGCTCGGCTCGTTTACTCAGTGCGATG
CGCCGGTTATTTCAATATTTATACCGGGAGAAACTGCGTGAGGATGATCCGACTGCGCTGCTCTCTTCACCCAAATTACC
GCAGCGCTTGCCGAAGGATTTAAGTGAGGCACAGGTCGATGCGTTACTTAACTCGCCCAATGTGGACATTCCCTTGGAAC
TGCGCGATAAAGCAATGCTGGAAGTGCTCTATGCCACCGGCTTGCGGGTGTCAGAATTGGTCGGGCTGACCATCAGTGAT
GTTAGTCTACGCCAAGGTGTGGTGAGAGTGATTGGTAAAGGGAATAAAGAGCGCTTGGTCCCCTTGGGGGAAGAAGCTGT
GTATTGGATTGAGAACTATATGGAGCATGGCCGGCCTTGGTTGGTTAATGGCGCATCGCTGGATGTATTGTTCCCCAGTA
ACCGTAGCCAGCAAATGACCCGTCAGACTTTCTGGCATCGCATCAAACACTATGCGATCCTTGCCGGTATTGATAGTGAA
CGGCTTTCACCCCATGTGCTACGCCATGCCTTTGCCACGCATCTGCTGAATCACGGTGCCGATTTACGTGTAGTGCAAAT
GTTACTGGGCCACAGTGATCTGTCGACAACTCAGATTTATACGCATGTAGCGACTGAACGTTTGAGACAGCTACATCAAC
AGCATCATCCACGCGCTTAA

Protein sequence :
MKQQDNPLIEQFLDALWLERNLAENTLASYRLDLHALVGWLTHHNSDLLRASPQDLQSFLAERIEGGYKATSSARLLSAM
RRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISD
VSLRQGVVRVIGKGNKERLVPLGEEAVYWIENYMEHGRPWLVNGASLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSE
RLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 3e-62 56
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 3e-62 56