Gene Information

Name : yfeD (YPTB2350)
Accession : YP_070865.1
Strain : Yersinia pseudotuberculosis IP 32953
Genome accession: NC_006155
Putative virulence/resistance : Virulence
Product : chelated iron ABC transporter permease yfeD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2771481 - 2772374 bp
Length : 894 bp
Strand : +
Note : similar to Yersinia pestis YPO2442 yfeD; chelated iron transport system membrane protein (100% evalue=1.E-166); Pasteurella multocida PM0397 yfeD; iron (chelated) transporter, permease (64.2% evalue=1.E-102); Citation: Bearden et al. (1998) J. Bacteriol.

DNA sequence : 
ATGAATATGCTGTTCAGTTTGATCAGTGAGCCATTCGCCTACCCCTTTATGCAGCGGGCAATTGTCGCGGCAATCGTCAC
TGGTGTGGTCTGCGCGATACTCTCTTGCTACCTGGTACTCAAAGGGTGGTCGCTAATGGGAGATGCTATTTCTCATGCTG
TGCTGCCAGGGATTGTTCTGGCTTTTTGGCTCGGTATCCCTCTGGTCATCGGCGCTTTTGTCTCAGGGATATTTTGTGCC
GTGGCAACTGGCTATTTAAAAGAAAACAGCCGGGTTAAAGAAGATACCGTCATGGGGATTGTTTTTTCTGGCATGTTCGC
GTTCGGCTTAGTGCTGTTCTCCCGTATAGATACTGACCAGCACCTCAGCCACATTTTGTTCGGTAACATGCTGGGGATTT
CGCTGACAGAACTGAAACAGACCCTGTGGATCGCAGGTTTCACGCTATTGGTGGTGTTACTAAAGCGCAAAGACTTTATG
TTGTACTGTTTCGATCCAAACCATGCGCGGGTTATCGGGCTACCCGTTAAGTTTCTGCATTACGGTTTACTTTGCTTACT
GGCATTGACTATCGTCGCGTCATTGCAGGCAGTTGGCGTTATTCTCGTCATCGCCATGTTGATAGCGCCGGGTATTATCG
CCTTTATGATTTGTCGTAGTTTTGATCAAATGCTGGTTGTCGCGACACTGGTTTCAGTGGTCGCCTGTGTTTTAGGTACA
TTAATCAGTTTTCATATTGATGGTGCAACAGGCCCATGCATCGTGATTATTCAAGCTTTATTCTTTGTTGTCGCCCTCAT
TTACAACCATATAAAACCGATTAAAGACCGAAAAATGGCACCACTCACCAAGGCAGTAAATCCAGAAAATACAGCCCCAA
GTAACCTGCCATAG

Protein sequence : 
MNMLFSLISEPFAYPFMQRAIVAAIVTGVVCAILSCYLVLKGWSLMGDAISHAVLPGIVLAFWLGIPLVIGAFVSGIFCA
VATGYLKENSRVKEDTVMGIVFSGMFAFGLVLFSRIDTDQHLSHILFGNMLGISLTELKQTLWIAGFTLLVVLLKRKDFM
LYCFDPNHARVIGLPVKFLHYGLLCLLALTIVASLQAVGVILVIAMLIAPGIIAFMICRSFDQMLVVATLVSVVACVLGT
LISFHIDGATGPCIVIIQALFFVVALIYNHIKPIKDRKMAPLTKAVNPENTAPSNLP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-64 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-64 54
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-64 53
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-64 52
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-64 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_070865.1 chelated iron ABC transporter permease yfeD BAC0442 Protein 4e-130 100
yfeD YP_070865.1 chelated iron ABC transporter permease yfeD BAC0352 Protein 1e-64 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_070865.1 chelated iron ABC transporter permease yfeD VFG0528 Protein 1e-64 52