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Name : YPTB1860 (YPTB1860) Accession : YP_070386.1 Strain : Yersinia pseudotuberculosis IP 32953 Genome accession: NC_006155 Putative virulence/resistance : Unknown Product : capsid portal protein Function : - COG functional category : R : General function prediction only COG ID : COG5518 EC number : - Position : 2206460 - 2207452 bp Length : 993 bp Strand : + Note : similar to Salmonella typhi STY4628 probable capsid portal protein (65.9% evalue=1.E-130); Salmonella typhimurium STM2723 Fels-2 prophage: similar to gpQ, portal vector protein, in phage P2 (67.2% evalue=1.E-132) DNA sequence : ATGGCGGGCAATAGTACCGCACAGGCTGAGGCGTTTACTTTTGACGACCCGATCCCAATGATGGATCGGCGCGATATTCT GGATTATTTGGAATGTGCCGTGATGGATCGCTGGTATGAGCCGCCGGTGTCATTCAACGGTCTGGCTAAGTCATTTCGTG CGGCGGTGCATCACAGCTCGCCTATCTACATGAAACGTAATGTACTGGTTAGCCTGTTTGAGCCGCACCGGCTGCTATCA AAACAGGACTTTAGCCGCTATGCGCTGGATTTTTTGGTATTCGCTAATTCGTTTTTAGAGGCCCGCTATAACCGGCTGGG CGGCATCATGAAACTGGTACCCAGCCCAGCAAAATACACCCGCCGCGGCGTGGAGGCGGACACCTATTGGTATGTCTCAT CCTATGCCAACCCACACCCGTTTGAAGCCAATAGCGTTTTTCACCTGCTAGACCCGGATATTAATCAGGAGATCTACGGC GTTCCTGAATATCTCGCCTCGCTAAACTCGACCTGGCTTAATGAAGCAGCCACTTTGTTCCGCCGTAAATATTATCTGAA TGGCAGTCACGCTGGATTTATTCTGTATATGAACGACGCCGCCCATAAACAGGAGGATATCGACGCCTTACGTAAGGCGC TGAAAGAATCCAAAGGGCCGGGCAATTTCCGCAATTTGTTTATGTATGCCCCGGCCGGTAAAAAGGACGGCATACAGGTG ATCCCACTTGCAGAGGTTGCCGCCAAGGATGAATTTGCCAGCATTAAGAACGTCACCCGCGACGACCAGCTCGCTATGCA ACGGGTGCCACCTCAACTGATGGGGATTTTACCCAATAACACCGGCGGTTTTGGTGATGTAGAAAAAGCCGCGCGGGTGT TTGCCATTAACGAACTGGCCCCCTTGCAAGAACGGCTGATGGAAATAAATGATTGGGTTGGGGAGGAAGTTGTCAGATTT AAGCCGTATGAATTACTTGCCAAACAAGAGTAA Protein sequence : MAGNSTAQAEAFTFDDPIPMMDRRDILDYLECAVMDRWYEPPVSFNGLAKSFRAAVHHSSPIYMKRNVLVSLFEPHRLLS KQDFSRYALDFLVFANSFLEARYNRLGGIMKLVPSPAKYTRRGVEADTYWYVSSYANPHPFEANSVFHLLDPDINQEIYG VPEYLASLNSTWLNEAATLFRRKYYLNGSHAGFILYMNDAAHKQEDIDALRKALKESKGPGNFRNLFMYAPAGKKDGIQV IPLAEVAAKDEFASIKNVTRDDQLAMQRVPPQLMGILPNNTGGFGDVEKAARVFAINELAPLQERLMEINDWVGEEVVRF KPYELLAKQE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY4628 | NP_458710.1 | probable capsid portal protein | Not tested | SPI-7 | Protein | 7e-115 | 66 |
| t4321 | NP_807917.1 | capsid portal protein | Not tested | SPI-7 | Protein | 7e-115 | 66 |
| unnamed | ABR13463.1 | predicted capsid packaging protein | Not tested | PAGI-6 | Protein | 2e-88 | 58 |
