|
Name : YPTB1764 (YPTB1764) Accession : YP_070290.1 Strain : Yersinia pseudotuberculosis IP 32953 Genome accession: NC_006155 Putative virulence/resistance : Unknown Product : capsid portal protein Function : - COG functional category : R : General function prediction only COG ID : COG5518 EC number : - Position : 2116834 - 2117871 bp Length : 1038 bp Strand : + Note : similar to Salmonella typhimurium STM2723 Fels-2 prophage: similar to gpQ, portal vector protein, in phage P2 (70.4% evalue=1.E-134); Ralstonia solanacearum RS03510 probable bacteriophage protein (64.8% evalue=1.E-133) DNA sequence : ATGAGTAAACGCAAAGGCCGCAAGGCATTAAGCCGACCAGCAACCAATCACACCGCCAGTCAACAGCAACCGGTGGAGGC GTTCACTTTTGGCGAACCCTCCGCCGTGCTCGATAAGCGGGAAATTCTGGATTACATCGAATGCACCGGTAACGGCAAGT GGTATGACCCGCCGATCAGCTTTGACGGGCTGGCGCGCAGCTTCCGTGCGGCGGTACATCACAGCTCACCGCTGTATGTG AAACGCAACATACTGGCAAGCACATTTACCCCTCACCCAATGCTCAGTCAGCAGGCTTTTAGCCGCTATGCACTGGATTA TCTGGTGTTCGGTAATGCGTTTTTAGAAGTACGTCGTAACCAGTTGGGCGCGCCACTGCGCCTCGACCCCAGCCCGGCCA AGTACACCCGCCGTGGGTTAGAGAAAGATTGTTATTGGTTTGTTCAAAACTGGAAAAATGAACACCTGTTTGAAACCGGT AGCGTTTTCCATCTGATAGAACCGGATATTAATCAGGAGCTTTACGGCCTGCCGGAATACCTCAGCGGCTTAAATTCTGC CTGGCTCAATGAAGCGGCCACGCTATTCCGCCGCAAGTATTACCAGAACGGTGCTCACGCGGGCTACATCCTGTATATGA CTGATGCGGCGCAAAGCAGCAGCGATATTGAGGCGATGCGTAAAGCCATGCGTGACACTAAAGGGTTAGGCAATTTTCGC AACCTGTTTATGTACGCGCCCAATGGCAAGAAAGACGGTATCCAGATTTTACCGTTGAGCGAAGTCGCCACCAAGGATGA TTTTTTTAATATCAAGAACGCCACCCGTGACGACCTGCTCAGTGTGCACCGGGTGCCGCCACAGATGATGGGGATTATTC CCAACAATACCGGTGGTTTCGGTGACGTCGGAAAAGCCTCACAAGTGTTTGTTCGTAACGAGTTAACGCCGTTGCAAGAA CGATTGAAGGAGGTGAATGACTGGATAGGGGAAGAGGTGATCCGGTTCAAGCCTTATGAACTGATAAGCGAGGAATAA Protein sequence : MSKRKGRKALSRPATNHTASQQQPVEAFTFGEPSAVLDKREILDYIECTGNGKWYDPPISFDGLARSFRAAVHHSSPLYV KRNILASTFTPHPMLSQQAFSRYALDYLVFGNAFLEVRRNQLGAPLRLDPSPAKYTRRGLEKDCYWFVQNWKNEHLFETG SVFHLIEPDINQELYGLPEYLSGLNSAWLNEAATLFRRKYYQNGAHAGYILYMTDAAQSSSDIEAMRKAMRDTKGLGNFR NLFMYAPNGKKDGIQILPLSEVATKDDFFNIKNATRDDLLSVHRVPPQMMGIIPNNTGGFGDVGKASQVFVRNELTPLQE RLKEVNDWIGEEVIRFKPYELISEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY4628 | NP_458710.1 | probable capsid portal protein | Not tested | SPI-7 | Protein | 4e-115 | 66 |
| t4321 | NP_807917.1 | capsid portal protein | Not tested | SPI-7 | Protein | 4e-115 | 66 |
| unnamed | ABR13463.1 | predicted capsid packaging protein | Not tested | PAGI-6 | Protein | 1e-89 | 53 |
