Gene Information

Name : hpcR (YPTB1636)
Accession : YP_070163.1
Strain : Yersinia pseudotuberculosis IP 32953
Genome accession: NC_006155
Putative virulence/resistance : Resistance
Product : homoprotocatechuate degradative operon repressor
Function : -
COG functional category : K : Transcription
COG ID : COG1846
EC number : -
Position : 1988037 - 1988504 bp
Length : 468 bp
Strand : -
Note : similar to Yersinia pestis YPO1760 hpcR, hpaR; homoprotocatechuate degradative operon repressor (100% evalue=1.E-83); Salmonella typhimurium STM1100 hpaR; 4-hydroxyphenylacetate catabolism (70.5% evalue=7.E-52)

DNA sequence : 
ATGCATGAATCACTGACCATCGCATTATTGCAGGCTCGTGAAGCCGCTATGGCTTTTTTTCGGCCTATCTTGAAAGCCAA
TCATCTGACTGAGCAGCAATGGCGGATCATTCGAGTGCTCGCGGATAATCGCTCAATAGATTTTCATGGGCTGGCCCGCC
AAACCTGTATTTTACGTCCAAGCCTAACGGGGATTTTGACGCGAATGGAGCGTAACAATTTGATTTTTCGCCTCAAACCC
GTCAACGATCAGCGCAAACTTTATGTCTCCTTAACTCAGGAGGGACAAAATTTGTATGACAACGCTCGGCCACAGGTTGA
AGAAGGTTACAGGCTAATTGAGGCAGCATTTTCACCAGATAAAATGGCGCAACTCTCTTTACTGCTGGATGAATTCATTA
CCGTGGGTAATAAACATCGGCAAGCGAATGAGATGTCAGAAAATGAGATGTTAGAAGATGAAGAGTGA

Protein sequence : 
MHESLTIALLQAREAAMAFFRPILKANHLTEQQWRIIRVLADNRSIDFHGLARQTCILRPSLTGILTRMERNNLIFRLKP
VNDQRKLYVSLTQEGQNLYDNARPQVEEGYRLIEAAFSPDKMAQLSLLLDEFITVGNKHRQANEMSENEMLEDEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpcR AAO17176.1 HpcR Not tested tcd island Protein 2e-51 78

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hpcR YP_070163.1 homoprotocatechuate degradative operon repressor BAC0505 Protein 5e-34 56