Gene Information

Name : YPTB0012 (YPTB0012)
Accession : YP_068562.1
Strain : Yersinia pseudotuberculosis IP 32953
Genome accession: NC_006155
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3328
EC number : -
Position : 17956 - 19143 bp
Length : 1188 bp
Strand : +
Note : similar to Yersinia pestis YPO1583 transposase for the IS285 insertion element (99.7% evalue=0)

DNA sequence :
ATGGACGAAAAGAAACTTAAAGCACTTGCGGCTGAACTGGCTAAAGGTCTTAAAACCGAAGCCGACCTTAATGCATTTTC
TCGTATGCTGACAAAGCTTACCGTCGAAACAGCGTTAAATGCAGAGCTTACCGAACACCTCGGGCACGAGAAAAACACCC
CTAAATCAGGCTCGAATACCCGCAACGGCTATTCGTCCAAAACACTGCTATGCGACGACGGCGAAATTGAGCTGAATACG
CCACGCGACCGCGAAAACACCTTTGAACCGCAGCTGATAAAGAAAAATCAGACGCGTATCACACAGATGGACAGCCAGAT
TTTGTCCCTGTACGCCAAAAGCATGACCACCCGCGAAATCGTCGCCACCTTCAAAGAGATGTATGACGCCGATGTGTCTC
CCACGCTGATATCTAAAGTCACCGATGCCGTAAAAGAGCAGGTTGCTGAATGGCAAAACCGCCAACTGGATGCTCTGTAT
CCCATTGTTTATATGGACTGCATTGTCGTAAAAGTCCGCCAGAACGGTAGCGTGATAAACAAAGCAGTGTTCCTAGCGCT
GGGCATCAACACTGAAGGTCAGAAAGAGCTGCTGGGCATGTGGCTGGCAGAAAATGAAGGTGCGAAGTTCTGGCTAAGTG
TGCTGACAGAGCTGAAAAATCGCGGTCTTCAGGACATTCTGATTGCCTGCGTGGATGGCCTGAAGGGGTTCCCGGATGCG
ATAAACAGTGTTTATCCGCAGACTCACATCCAGCTGTGCATCATCCATATGGTACGCAACAGCCTGAAATATGTGTCATG
GAAGGACTATAAAGCCGTCACCAGCGGTTTGAAAATGGTGTATCAGGCTCCGACAGAAGAGGCGGCGCTGATGGCGCTGG
ATAAGTTTGCGGAGGCCTGGGACGACAAATACCCGCAAATTAGCAAAAGTTGGCGTACGCACTGGGAAAATCTCAATACA
TTCTTCGGCTATCCGCCCGATATCCGCAAGGCTATCTACACCACGAATGCCATCGAATCGGTGAACAGCGTGATCCGTGC
AGCCATTAAAAAGCGCAAAGTGTTCCCGACAGACGACTCAGTGCGGAAGGTTGTTTATTTGGCGATCAAGGATGCATCAA
AAAAAATGGAGTATGCCGATCCAGAACTGGCGGTTAGCGATGAGCCGTTTTATTATCGAGTTCGGTGA

Protein sequence :
MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNT
PRDRENTFEPQLIKKNQTRITQMDSQILSLYAKSMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALY
PIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDA
INSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNT
FFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKMEYADPELAVSDEPFYYRVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
api41 CAF28515.1 is285 transposase Not tested YAPI Protein 1e-163 99
CPR_0630 YP_697957.1 ISCpe3, transposase Not tested Not named Protein 1e-81 48
CDHC03_2103 YP_005139146.1 transposase-like protein Not tested Not named Protein 9e-72 43
tnp7109-23 YP_001800851.1 transposase for insertion sequence Not tested Not named Protein 1e-71 42
tnp7109-31 YP_001800937.1 transposase for insertion sequence Not tested Not named Protein 8e-70 42