Gene Information

Name : pYV0087 (pYV0087)
Accession : YP_068496.1
Strain :
Genome accession: NC_006153
Putative virulence/resistance : Virulence
Product : yscK; type III secretion protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG5222
EC number : -
Position : 60457 - 61107 bp
Length : 651 bp
Strand : +
Note : identical to Y. pestis YPCD1.60

DNA sequence : 
TTGGTTACAACGCAAGAAGTGATGATGGAAAATTATATTACCTCTTTTCAATTGCGCTTCTGCCCCGCGGCTTATTTGCA
CTTGGAACAGTTACCATCATTATGGCGTTCAATATTGCCCTACTTACCTCAGTGGCGCGATAGTGCTCATCTCAATGCTG
CTTTATTGGATGAATTTTCTCTTGATACCGACTATGAAGAGCCCCATGGGCTGGGGGCGCTGCCTTTGCAGCCTCAATCA
CAGCTCGAACTGTTACTTTGTCGCCTTGGATTAGTTCTGCATGGGGAGGCGATTCGCCGTTGTGTACTGGCCTCCCCATT
ACAACAATTATTGACATTGGTTAATCAAGAAACATTAAGGCAAATTATTGTACAGCATGAGCTGCTAATCGGGCCTTGGC
CCACTCACTGGCAGCGCCCGCTGCCAACAGAAATAGAGAGCCGTACCATGATCCAGTCGGGGCTGGCTTTTTGGTTAGCA
GCAATGGAACCCCAACCTCAGGCATGGTGTAAACGGCTCAGTTTACGCCTCCCATTAGCTACGCCGTCAGAACCTTGGTT
AGTGGCCGAGTCACAACGCCCACTGGCCCAAACTTTATGTCACAAACTTGTCAAACAGGTTACGCCTACATGCAGCCATT
TGTTCAAATAA

Protein sequence : 
MVTTQEVMMENYITSFQLRFCPAAYLHLEQLPSLWRSILPYLPQWRDSAHLNAALLDEFSLDTDYEEPHGLGALPLQPQS
QLELLLCRLGLVLHGEAIRRCVLASPLQQLLTLVNQETLRQIIVQHELLIGPWPTHWQRPLPTEIESRTMIQSGLAFWLA
AMEPQPQAWCKRLSLRLPLATPSEPWLVAESQRPLAQTLCHKLVKQVTPTCSHLFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscK AAO18026.1 LscK Virulence TTSS locus Protein 5e-40 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pYV0087 YP_068496.1 yscK; type III secretion protein VFG0410 Protein 2e-83 100
pYV0087 YP_068496.1 yscK; type III secretion protein VFG0219 Protein 2e-23 41