Gene Information

Name : pYV0085 (pYV0085)
Accession : YP_068494.1
Strain :
Genome accession: NC_006153
Putative virulence/resistance : Virulence
Product : yscI, lcrO; type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 59390 - 59737 bp
Length : 348 bp
Strand : +
Note : identical to Y. pestis YPCD1.58

DNA sequence : 
ATGCCGAACATAGAAATAGCTCAGGCCGATGAGGTGATCATAACCACGCTGGAGGAATTAGGGCCGGCAGAGCCAACAAC
TGACCAAATAATGCGCTTTGATGCGGCAATGTCAGAAGATACGCAGGGACTGGGCCATTCACTCCTCAAGGAGGTTAGTG
ATATTCAGAAGTCTTTTAAGACGGTTAAAAGTGACTTACACACTAAGCTGGCTGTTTCAGTTGATAATCCCAACGACCTG
ATGCTAATGCAATGGTCACTTATCCGTATAACAATCCAAGAAGAACTTATCGCCAAGACTGCCGGGCGAATGAGCCAAAA
TGTTGAAACCTTGTCGAAGGGGGGGTGA

Protein sequence : 
MPNIEIAQADEVIITTLEELGPAEPTTDQIMRFDAAMSEDTQGLGHSLLKEVSDIQKSFKTVKSDLHTKLAVSVDNPNDL
MLMQWSLIRITIQEELIAKTAGRMSQNVETLSKGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscI AAO18028.1 LscI Virulence TTSS locus Protein 1e-24 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pYV0085 YP_068494.1 yscI, lcrO; type III secretion protein VFG0408 Protein 3e-49 100
pYV0085 YP_068494.1 yscI, lcrO; type III secretion protein VFG0217 Protein 2e-21 49