Gene Information

Name : pYV0082 (pYV0082)
Accession : YP_068491.1
Strain :
Genome accession: NC_006153
Putative virulence/resistance : Virulence
Product : yscF; type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 58283 - 58546 bp
Length : 264 bp
Strand : +
Note : identical to Y. pestis YPCD1.55

DNA sequence : 
ATGAGTAACTTCTCTGGATTTACGAAAGGAACCGATATCGCAGACTTAGATGCGGTGGCTCAAACGCTCAAGAAGCCAGC
AGACGATGCAAACAAAGCGGTTAATGACTCGATAGCAGCATTGAAAGATAAGCCTGACAACCCGGCGCTACTTGCTGACT
TACAACATTCAATTAATAAATGGTCGGTAATTTACAATATAAACTCAACCATAGTTCGTAGCATGAAAGACTTAATGCAA
GGCATCCTACAGAAGTTCCCATAA

Protein sequence : 
MSNFSGFTKGTDIADLDAVAQTLKKPADDANKAVNDSIAALKDKPDNPALLADLQHSINKWSVIYNINSTIVRSMKDLMQ
GILQKFP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscF AAO18031.1 LscF Virulence TTSS locus Protein 1e-23 75

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pYV0082 YP_068491.1 yscF; type III secretion protein VFG0405 Protein 5e-35 100
pYV0082 YP_068491.1 yscF; type III secretion protein VFG0214 Protein 2e-19 69