Gene Information

Name : pYV0080 (pYV0080)
Accession : YP_068489.1
Strain :
Genome accession: NC_006153
Putative virulence/resistance : Virulence
Product : yscD; type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 56826 - 58085 bp
Length : 1260 bp
Strand : +
Note : similar to Y. pestis YPCD1.53

DNA sequence : 
GTGAGTTGGGTCTGTCGTTTTTATCAAGGGAAGCACCGTGGTGTTGAAGTTGAGCTTCCTCATGGGCGCTGTGTTTTTGG
TTCAGACCCGTTGCAGTCAGATATTGTTCTTTCTGACAGCGAAATAGCACCCGTGCATTTAGTGCTGATGGTCGATGAAG
AAGGTATTCGCCTAACTGATTCTGCAGAACCTCTACTACAAGAAGGGCTTCCCGTGCCGTTGGGGACTCTTCTTCGCGCG
GGCTCTTGTCTGGAAGTAGGTTTTTTACTGTGGACATTTGTCGCCGTAGGGCAACCTTTGCCAGAGACGTTACAGGTTCC
CACGCAGAGAAAAGAGCCAACCGACAGGTTACCTCGTTCACGACTTGGGATTGGGCTTGGAGTTCTTTCTTTATTGTTGC
TTTTGACTTTTTTGGGGCTGCTAGGGCACGGATTGTGGCGCGAGTATAACCAGGATGGACAACTTGTTGAGCAAGAAGTA
CGGCGCTTGCTGGCAACTGCTGCTTACAAGGATGTCGTTTTAACATCGCCCAAAAAAGAGGGTGAACCTTGGTTATTAAC
TGGTTATATCCAGGATAATCATGCCCGCTTGTCACTGCAAAATTTTCTTGAGAGCCATGGCATTCCATTCCGGCTTGAAC
TGCGCAGCATGGAAGAACTGCGTCAGGGGGCAGAATTCATCCTGCAACGGTTGGGATACCATGGAATTGAGGTTTCTTTA
GCACCGCAAGCGGGATGGCTACAATTGAATGGGGAAGTGTCAGAGGAAATACAAAAGCAAAAAATTGATAGCCTGCTGCA
AGCTGAAGTGCCAGGGCTGCTCGGTGTAGAAAGTAAAGTGCGGATTGCCGGTAATCAACGCAAGCGGCTTGATGCATTAC
TTGAACAATTTGGTCTGGATTCAGATTTCACTGTAAATGTTAAAGGTGAGCTGATTGAATTACGCGGGCAAGTCAATGAT
GAAAAATTGAATTCATTTAATCAACTACAACAAACTTTTCGCCAAGAGTTTGGCAATCGACCTAAATTAGAACTGGTCAA
TGTCGGGGGGCAACCCCAGCATGATGAATTGAATTTCGAGGTGCAAGCTATCTCGTTAGGGAAAGTGCCCTATGTGGTAC
TCGACAATCATCAACGCTATCCAGAAGGTGCCATACTTAACAATGGCGTTCGTATTCTGGCTATTCGACGCGATGCGGTG
ATTGTGAGTAAAGGAAAACGGGAATTTGTGATCCAACTCAATGGAGGTAAACCTCGATGA

Protein sequence : 
MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRA
GSCLEVGFLLWTFVAVGQPLPETLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYNQDGQLVEQEV
RRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSL
APQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVND
EKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAV
IVSKGKREFVIQLNGGKPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscD AAO18032.1 LscD Virulence TTSS locus Protein 4e-82 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pYV0080 YP_068489.1 yscD; type III secretion protein VFG0403 Protein 0.0 100
pYV0080 YP_068489.1 yscD; type III secretion protein VFG0212 Protein 4e-75 43