Gene Information

Name : pYV0074 (pYV0074)
Accession : YP_068483.1
Strain :
Genome accession: NC_006153
Putative virulence/resistance : Virulence
Product : yscU; type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 51210 - 52274 bp
Length : 1065 bp
Strand : +
Note : identical to Y. pestis YPCD1.47

DNA sequence : 
ATGAGCGGAGAAAAGACAGAGCAACCCACCCCGAAGAAAATCCGTGATGCGCGCAAAAAGGGACAGGTAGCGAAAAGTAA
GGAAGTGGTCTCTACTGCGCTTATCGTCGCGCTGAGTGCGATGTTAATGGGGCTTTCTGACTACTATTTCGAGCATTTTA
GTAAGCTGATGCTAATCCCCGCAGAGCAGAGCTATCTTCCTTTCTCGCAGGCGCTTAGCTATGTGGTTGACAATGTGTTG
CTCGAGTTTTTTTATCTCTGTTTTCCTTTGTTAACAGTGGCGGCATTAATGGCGATCGCATCTCATGTTGTGCAGTATGG
TTTTCTTATAAGTGGTGAAGCAATTAAACCGGATATTAAAAAAATCAATCCAATAGAGGGTGCCAAGCGTATCTTTTCCA
TCAAAAGTTTAGTGGAGTTTCTCAAATCCATTCTCAAGGTTGTTTTGCTCAGTATACTCATCTGGATAATCATTAAGGGA
AATCTAGTCACACTCTTGCAGTTGCCAACCTGTGGAATTGAATGTATTACCCCTTTATTGGGGCAAATACTCCGGCAGTT
GATGGTTATCTGTACTGTTGGCTTTGTGGTCATCTCCATAGCCGACTATGCCTTTGAATACTATCAATATATTAAGGAAC
TTAAAATGAGCAAGGATGAGATCAAACGCGAGTACAAAGAAATGGAGGGTAGCCCAGAAATCAAAAGCAAGCGTCGTCAG
TTTCATCAAGAGATCCAATCGAGGAACATGCGGGAAAATGTTAAACGCTCATCAGTGGTGGTAGCTAATCCGACCCATAT
TGCTATTGGTATTCTTTACAAGCGAGGGGAAACACCACTACCGTTGGTAACATTCAAATATACCGATGCCCAAGTTCAGA
CTGTGCGCAAAATAGCAGAAGAAGAAGGGGTGCCTATTTTACAACGTATCCCATTAGCCCGTGCTCTTTATTGGGATGCG
CTCGTCGATCACTATATTCCGGCTGAGCAAATAGAGGCCACAGCTGAAGTGCTACGATGGCTAGAAAGGCAAAATATCGA
GAAACAACATTCCGAAATGTTATAA

Protein sequence : 
MSGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQSYLPFSQALSYVVDNVL
LEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKG
NLVTLLQLPTCGIECITPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ
FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDA
LVDHYIPAEQIEATAEVLRWLERQNIEKQHSEML

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscU AAO18037.1 LscU Virulence TTSS locus Protein 2e-115 73

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pYV0074 YP_068483.1 yscU; type III secretion protein VFG0397 Protein 8e-157 100
pYV0074 YP_068483.1 yscU; type III secretion protein VFG0185 Protein 3e-96 67