Gene Information

Name : pYV0056 (pYV0056)
Accession : YP_068465.1
Strain :
Genome accession: NC_006153
Putative virulence/resistance : Virulence
Product : lcrH, sycD; low calcium response protein H
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG5010
EC number : -
Position : 38673 - 39179 bp
Length : 507 bp
Strand : -
Note : similar to Y. pestis YPCD1.30c

DNA sequence : 
ATGCAACAAGAGACGACAGACACTCAAGAATACCAGCTGGCAATGGAATCCTTCCTAAAAGGAGGGGGAACTATCGCCAT
GCTCAACGAAATTTCAAGTGATACTTTAGAGCAACTCTACTCTCTTGCATTTAACCAATACCAGTCAGGAAAATACGAGG
ATGCTCACAAGGTCTTTCAAGCTCTCTGTGTGCTAGACCACTATGATTCACGTTTCTTTTTAGGGCTAGGCGCTTGTCGT
CAAGCCATGGGGCAATACGACTTAGCGATTCATAGCTACAGCTATGGCGCCATAATGGATATAAAAGAACCTCGTTTTCC
GTTTCATGCGGCCGAATGTTTACTGCAAAAGGGAGAGCTTGCTGAAGCAGAAAGTGGCTTGTTCTTGGCTCAAGAGCTTA
TCGCAGACAAACCTGAGTTTAAGGAGCTTTCCACCCGAGTTAGCTCAATGTTAGAAGCAATTAAATTGAAAAAGGAGATG
GAACATGAGTGCGTTGATAACCCATGA

Protein sequence : 
MQQETTDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACR
QAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKPEFKELSTRVSSMLEAIKLKKEM
EHECVDNP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssH AAO18054.1 LssH Virulence TTSS locus Protein 3e-48 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pYV0056 YP_068465.1 lcrH, sycD; low calcium response protein H VFG0380 Protein 1e-74 99
pYV0056 YP_068465.1 lcrH, sycD; low calcium response protein H VFG0202 Protein 5e-45 58