|
Name : DP0840 (DP0840) Accession : YP_064576.1 Strain : Desulfotalea psychrophila LSv54 Genome accession: NC_006138 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 942823 - 945462 bp Length : 2640 bp Strand : - Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : ATGCCAAAATTAAAAATAACCCCGATGATGCAGCAGTACTTTAAGCTCAAAGAACAACATCCCCATACCATCCTCTTTTA CCGAATGGGAGATTTTTACGAGATGTTCTTTGAGGACGCCATCACCGCCTCCAAGATTCTTGGTATCACCCTCACCTCCC GCAATAAGAAATCGGACAGTGCTCAAATACCCATGTGCGGAATCCCCTACCATGCCCTGCAGGGATATCTGGCAAAGATG GTAGAGGCGGGCAAGCGAGTAGCAATCTGTGAACAGGTGGAGGATCCCAGTACAGCCCAAGGTATTGTCAAACGAGAGGT GGTGCAGATAGTCACTCCCGGAGTGGTCACAGACAATCAACTCCTCGATGCCAAGAGCAATAACTTTGTCACGGCCATTA GCAGGGGAAAAAACAACCGCTATGGTCTCTCCTTTCTTGATATTACCACCGGTGAGTTCATCGTTGCCGATTTTGCCGGG AGCGATGGTGAGGCAGATATCCTCGACCAACTGACCCGCCTCACCCCCACAGAACTGCTCGTCTCAGAAGAGGAGCTAGA GGACTTTGCCGAGACCATCGATCTTGCCACCACCCTCATCCCCGGCCTCTGTATAACCCCGCGCCCCCACCACCTCTTTG ACTTTGACCAATCGCATGAAAAGCTGCTTGAACATTTCGCCGTCATCAGTCTGGATGGATTTGGATGTGAGACCCTTGTC GAGGGACAGATCGCCGCGGCCATACTCCTCGACTATATTGAGGAGACCCAAAAATCTGCCATCCACCATATAGAGAAGCT GAGCCGCCTGGAACTCGATGCCATCCTGCAAATAGATGACTCTTCGCGGCGTAACCTTGAACTTACCCAGACAATTGTCG GTGGCAACCGAAGCGGTTCCCTGCTCTCCGTCCTTGATCTGACCACAACGCCCATGGGGGCCAGATTTCTCAAACAGGCC ATCCTCTTTCCCCTTCAGGACAGGGCAAGAATCCTCCGCCGCCTCAACGCAGTGGGCTATTTTTTTAACAACTCAGAGGC ACGTCACCAGATCAGAGAGTTGCTCGATCAGGTCTATGATATAGAACGACTCAACAGCAGGATCACCCTGGGCTCGGCCA ATGGCCGCGATATGCTGGCCATGAAACAGTCTCTGGCCCGCCTGCCTGAAATGCTGACAGAGCTACGAAAATGCGATACC GATGAGCTGATAGAGATCGAGCAGACACTTGATACTCTGGAAGACCTGCACCAACTCTTGGATAAAAGCATCCACCCAGA CCCACCGACAAATATACGAGAGGGAAACCTCATTCGGGAAGGTTATAATGCCGAGCTTGATGAGATCATTGTTCTCCTCC GGGATGGGAAGAAACTCATTCTTGATCTGGAGGCCAAAGAGAGGGAACGAACGGGGATTGCCAAGCTCAAGGTGAGTTAC AACAGGGTCTTTGGCTATTTCATCGAGGTGAGCAGGGCCCAGAGTTCTCGGGTACCGGAACACTATATTCGTAAGCAGAC CCTGGTCAATGCCGAGAGATTTATCACCCCTGAACTGAAGGAGTTTGAAACCAAGGTCCTGGGCGCCGAAGATCGCAGAC TAGAACTGGAGTATCAGCTCTTTGCCACTGTCCGAAATGAGCTTGCCAGCCATTCCAGCAGGTTTCTGGCCACAGCTCAC CAGTTGGCCCTTCTTGATTTTTATGCCTCGGCCGCCGAAGTATCACAGCAGTACAACTATCACCGACCCGAGATCAGAGA CGATGGCAGCCTGGAGATACGAGAGGGACGACACCCCGTTATCGAGAGATCACTACCGGCAGGAAAGTTCGTCCCCAACG ACGTCTATCTTGATCAGGCTGAAAATGAAATTCTGGTTATCACCGGCCCGAATATGGCCGGTAAATCCACGGTACTGAGA CAAACGGCCCTCATTGTCCTCATGGCCCAGATGGGCTACTATGTACCCGCAGATTCCGCCCGAATCGGGGTTGTTGACCG AATATTTACCCGGGTCGGGGCAATGGATGACCTACGCAGGGGCCAATCCACCTTTATGGTGGAGATGAGTGAAACCGCCA ATATTCTCAACAATGCCACCCCGCGCAGTCTTGTTATCCTCGATGAGATCGGTCGGGGTACATCCACCTACGATGGTCTC TCCATCGCCTGGGCTGTAACAGAACACCTGGTGCAAAAAGACGGTATCGGAGTCAAGACCATGTTCGCCACCCACTACCA CGAGCTCACCGATCTGGCCCGCAGATATGCACGGATACAGAACTACTCCATCGCTGTACGGGAGTGGCAGAAGAGCGTTA TCTTCCTCCATAAGCTGATAAAGGGTGGTACCAGCCGCAGTTATGGTATTCAGGTGGCGGCTCTGGCAGGCGTCCCCGCC CAGGTGGTGGAACGGGCCCATGAAATACTGCACAGCATTGAATCCGGAGATTTTCTAGCAGGAGAAAAGGTAGGAGGGCA GCCTCAGAAGGAGCTGAGCGAGCACAAGCCCCACCAGCCCTCCCTCTTTGCCCCTCCGACCGACGAGATACGGACAAAGA TCAGGGAAATGGATTTAGACGAGCTGACACCCAGACAGGCACTTGATGCCCTCTACGCCCTAAAGGAGATGACCGTCTAG Protein sequence : MPKLKITPMMQQYFKLKEQHPHTILFYRMGDFYEMFFEDAITASKILGITLTSRNKKSDSAQIPMCGIPYHALQGYLAKM VEAGKRVAICEQVEDPSTAQGIVKREVVQIVTPGVVTDNQLLDAKSNNFVTAISRGKNNRYGLSFLDITTGEFIVADFAG SDGEADILDQLTRLTPTELLVSEEELEDFAETIDLATTLIPGLCITPRPHHLFDFDQSHEKLLEHFAVISLDGFGCETLV EGQIAAAILLDYIEETQKSAIHHIEKLSRLELDAILQIDDSSRRNLELTQTIVGGNRSGSLLSVLDLTTTPMGARFLKQA ILFPLQDRARILRRLNAVGYFFNNSEARHQIRELLDQVYDIERLNSRITLGSANGRDMLAMKQSLARLPEMLTELRKCDT DELIEIEQTLDTLEDLHQLLDKSIHPDPPTNIREGNLIREGYNAELDEIIVLLRDGKKLILDLEAKERERTGIAKLKVSY NRVFGYFIEVSRAQSSRVPEHYIRKQTLVNAERFITPELKEFETKVLGAEDRRLELEYQLFATVRNELASHSSRFLATAH QLALLDFYASAAEVSQQYNYHRPEIRDDGSLEIREGRHPVIERSLPAGKFVPNDVYLDQAENEILVITGPNMAGKSTVLR QTALIVLMAQMGYYVPADSARIGVVDRIFTRVGAMDDLRRGQSTFMVEMSETANILNNATPRSLVILDEIGRGTSTYDGL SIAWAVTEHLVQKDGIGVKTMFATHYHELTDLARRYARIQNYSIAVREWQKSVIFLHKLIKGGTSRSYGIQVAALAGVPA QVVERAHEILHSIESGDFLAGEKVGGQPQKELSEHKPHQPSLFAPPTDEIRTKIREMDLDELTPRQALDALYALKEMTV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 5e-143 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| DP0840 | YP_064576.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 2e-158 | 43 |
