|
Name : DP0047 (DP0047) Accession : YP_063783.1 Strain : Desulfotalea psychrophila LSv54 Genome accession: NC_006138 Putative virulence/resistance : Virulence Product : lipopolysaccharide biosynthesis protein (WbpO) Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 47110 - 48390 bp Length : 1281 bp Strand : - Note : - DNA sequence : ATGGAATATTCGCTTGATACTACTAAAATTGGTATTGTTGGTCTTGGCTATGTCGGTTTACCCCTGGCTGTTGAGTTTGG TAAAAAAATCTCGACGATTGGCTTTGACCTAAATGAGAGCCGTGTCCGTGATCTTGTCGCTGGTAGCGACTTCACCCTGG AATGTTCAGCAGAAGAGTTGAGTAAGGCCAGTGAGTTACAGTATTCTACAAACCTTGAAGATCTGCGGGACTGTAATGTC TATATTGTCACTGTGCCGACCCCCATTGATGAGCATAAATGTCCAGACCTCTCTCCCCTGGTAAAGGCTTCAGAGAGTTT GGGCCAAGTTCTCTCCAAGGGTGATATTGTCATATATGAGTCCACTGTCTACCCTGGTGCCACCGAAGAGAACTGTGTGC CTGTTTTAGAGCGTGTTTCAGGTCTCTCCTATAATAAAGATTTTTTTGCGGGGTATAGCCCAGAGCGTATTAATCCCGGC GATAAAGAGCATAGCGTGACCATGATCAAAAAGGTTACCTCGGGCTCTACTGAGCAGATAGCCGACTTTGTGGATGAACT CTACTCTTCAATTATTATAGCGGGAACCCATAAGGCCTCTTCTATTCGGGTGGCTGAGGCTGCTAAGGTGATTGAAAATA CGCAACGGGATTTGAATATTGCCCTTATCAATGAGCTTGCCATCATCTTTAATAAACTTGGTATTGATACCGAAGAAGTT TTAGAGGCAGCAGGAACAAAGTGGAACTTCCTTCCCTTTAGACCGGGTCTGGTGGGGGGACACTGCATCGGGGTTGACCC ATACTATCTCACCCATAAGGCCCAATCCGTGGGTTACCATCCAGAGGTGATTCTCTCAGGGCGTCGCATCAATGATAATA TGGGAAGCTATGTTGCCTCGCAGCTTGTAAAGGCGCTTATCAAGAAACGAATTCAGGTGGAAGGTGCCAATGTCCTCCTT CTTGGTCTCACCTTTAAGGAAAACTGTCCTGATCTGCGCAATACCAAGGTGGTGGATATTATCTCGGAGCTCGCCCAGTA TAATATCCAGGTAGATGTCTATGACCCTTGGGTTTCTAAGATTGAGGCGGAAAAAGAGTATGGCATTTCTCCTGTAGAAA AACCAGGGCAAAATAAGTATGATGCCGTAGTTGTGGCTGTAGCTCATAATGAGTTTGTAGCCCTTGGAGAGTCCGGTTTA CAAGATTTGCTGAGGGAAAAATCAGTTGTATACGATCTTAAATATATACTGCCCAGGGCAGTTGTTGATATAAGGCTATA G Protein sequence : MEYSLDTTKIGIVGLGYVGLPLAVEFGKKISTIGFDLNESRVRDLVAGSDFTLECSAEELSKASELQYSTNLEDLRDCNV YIVTVPTPIDEHKCPDLSPLVKASESLGQVLSKGDIVIYESTVYPGATEENCVPVLERVSGLSYNKDFFAGYSPERINPG DKEHSVTMIKKVTSGSTEQIADFVDELYSSIIIAGTHKASSIRVAEAAKVIENTQRDLNIALINELAIIFNKLGIDTEEV LEAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQSVGYHPEVILSGRRINDNMGSYVASQLVKALIKKRIQVEGANVLL LGLTFKENCPDLRNTKVVDIISELAQYNIQVDVYDPWVSKIEAEKEYGISPVEKPGQNKYDAVVVAVAHNEFVALGESGL QDLLREKSVVYDLKYILPRAVVDIRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 2e-131 | 63 |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 2e-131 | 63 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-109 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| DP0047 | YP_063783.1 | lipopolysaccharide biosynthesis protein (WbpO) | VFG0431 | Protein | 7e-132 | 63 |
