Gene Information

Name : DP0046 (DP0046)
Accession : YP_063782.1
Strain : Desulfotalea psychrophila LSv54
Genome accession: NC_006138
Putative virulence/resistance : Virulence
Product : lipopolysaccharide biosynthetic protein (WbpP)
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 46064 - 47101 bp
Length : 1038 bp
Strand : -
Note : -

DNA sequence : 
ATGACAAGATACCAAGAGGTACAACAGGAATTAAAAGATAGCCCCAAGACCTGGCTTATCACAGGTGTTGCAGGATTTAT
TGGCTCTAACCTTTTAGAGACTCTTCTTGGCCTGGGGCAAAAAGTTGTGGGTCTCGATAATTTTGTTACAGGATACCAGC
ATAACCTTGATGAAGTTGAAGGGGCGGTGACAGATGCTCAATGGCAAAACTTTCGTTTTATTGAAGGGGATATTTGTAGT
CTTGATGCCTGCCAAGAAGCCTGTCAGGGCGTTGACTATGTGCTCCAGCAGGCAGCTCTTGGTTCTGTGCCTCGTTCCAT
TGTTGACCCGATTACCACCAACAATACCAATATCAGTGGGTTTTTGAATATGCTTGTGGCGGCTCGTGATGCTGAGGTGA
AAAGCTTTACCTATGCCGCCTCCAGCTCTACCTATGGTGACCACCCAGCCCTGCCTAAGGTAGAGGAGAATATAGGTAAT
CCCCTCTCTCCCTATGCTGTAACCAAATATGTCAATGAGCTCTACGCCTCTGTCTTTGCCAGAACCTATAGTTTTAAGAC
CATAGGTCTTCGCTACTTTAATATTCTGGGTAAACGTCAGGATCCCAATGGTGCCTATGCGGCTGTCATTCCCCTCTGGA
CTGCGGCCATGATTAATGATGAAACTGTTTTTATCAATGGTGATGGAGAGACCAGCCGTGATTTTTGCTTTATAGAGAAT
GCAGTACAGGCAAATATCCTTGCTGCAACAGCGACAGAAGAGGCTAGGGACAATGTCTACAATGTTGCCGTTGGCGATAG
GACAACACTCAATGAACTGTTCAACCTCATAAAGCATAATCTTGCAGATCATGGCATAGTCTATAACCTAGATCCGAGCT
ATCGTGACTTTCGTGCAGGTGATGTGCGGCATTCTCAGGCAGATACCACTAAGATAAAAAGGCTTTTGGGATATAGTCCA
CAGTATAAAATTGGTGCGGGAATAGAGAAGGCTATGGGCTGGTATGTGCAGAGTCTTTCCGTCTCCGGGCATAAATAA

Protein sequence : 
MTRYQEVQQELKDSPKTWLITGVAGFIGSNLLETLLGLGQKVVGLDNFVTGYQHNLDEVEGAVTDAQWQNFRFIEGDICS
LDACQEACQGVDYVLQQAALGSVPRSIVDPITTNNTNISGFLNMLVAARDAEVKSFTYAASSSTYGDHPALPKVEENIGN
PLSPYAVTKYVNELYASVFARTYSFKTIGLRYFNILGKRQDPNGAYAAVIPLWTAAMINDETVFINGDGETSRDFCFIEN
AVQANILAATATEEARDNVYNVAVGDRTTLNELFNLIKHNLADHGIVYNLDPSYRDFRAGDVRHSQADTTKIKRLLGYSP
QYKIGAGIEKAMGWYVQSLSVSGHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 4e-109 63
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 4e-109 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DP0046 YP_063782.1 lipopolysaccharide biosynthetic protein (WbpP) VFG0430 Protein 2e-109 63