Gene Information

Name : DP2235 (DP2235)
Accession : YP_065971.1
Strain : Desulfotalea psychrophila LSv54
Genome accession: NC_006138
Putative virulence/resistance : Virulence
Product : Ntr family protein two-component system response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2570338 - 2571774 bp
Length : 1437 bp
Strand : -
Note : -

DNA sequence : 
ATGAGAACAAAATATAATAATATTCAATCCAAACAGGGAATTATAATGTGTAGCTACTCTATACTGGTAGTAGACGATGA
GCCTAATTATCTGATCGTTCTCTCAGAACTATTACGTGATGAAGATCTGGAGGTTTTTACTGCTGGAAGTGGTAAGGCAG
GACTTGATATATGCCGTGAGGTAGACCTTGATCTGGTTATTACCGATATGCAGATGGACGGTATGGACGGTATGGCCCTT
TTGGAGCAGATAAAAGAACTTAATCCGGATTTGCCGGTGCTCATCATGACAGCCCACGCCGAGGTGGAAAAGGCAGTTAA
GGCTATGCAGGCAGGCGCTTTTGGTTATCTGGCTAAACCGTTTGCCAACGATGAGCTCTTGGTGAATATTTACAGGGCTG
CCCGCCATTACTCTCTTATCCGAGAAAATAAGAGATTACGTCATCAACTGCAGAGTGAGGATTGCTTTAGTGGTATTGTT
GGTAAGAGTCCCAGTATGCAGAGAGTGTACAAACTTATCCGTAAGGTTGCCCCAACTCCTGCCTCGGTTCTTATAACAGG
AGAAAGCGGTACGGGTAAAGAGCTTGTCGCTCAAGCCGTTCACTCCACCAGTCCCCGGCGGGATGAGGCCTTTATTGCCG
TGAACTGTGCTGCCCTTTCGGCAAACCTGCTTGAAAGTGAACTCTTTGGCCATGAAAAAGGTGCCTTTACTGGAGCCGCA
TCCATGCGTAAGGGGCGTTTTGAGCTTGCTGCAGGTGGAACTATTTTTCTTGATGAGATCAGTGAGATCCCGCTAGAACT
GCAATCGAAGTTGCTTCGTATCTTGCAGGAAAAGAGTTTTGAGAGGGTGGGTGGGGCAAAGACCCTTCATGTTGATGTGC
GGGTGATAAGTGCCTCTAATAAAGATCTTAAGGAAGAGGTAGCAGCCGGTCATTTTCGGGAAGACCTTTTTTATCGCCTG
AACGTTATTCACCTGAATCTGCCCCCTCTTCGGGAGCGCCTAGACGATTTGCCCCTTTTAGTGGCCTTTTTTATAGAAAA
GTATAGAAAAATTTTGCAGTTGGAGAATCTCGTGGTCGGCGAAGAGGCAATGAAACTTCTTCTAAGGCTTCCTTGGGATG
GTAATGTGCGTGAGCTTGAGAATACCATTGAGAGAGCCGCCATTCTCTGTGATGCAGGCAATATTATGGTGGAAGATGTA
CAGCCGGAGACGGTCTATAATAAGGAGGATCATTGGCAACCAGGCGGGGATCTCAGCAATTTTATCCCGGAATCGGTGGG
GCTTAACGAGGTTCTCTATGCTGTTGAGGAGAGAATGCTTATTAAGGCCTTGGATGAATCCAATCAGGTGCAGGCAAGGG
CCGCGTCCCAGCTTGGTATTACCAAGAGTTTATTGCAGTATAAGCTGAAAAAATATGGTTTAAAAAAGAAGAAATAG

Protein sequence : 
MRTKYNNIQSKQGIIMCSYSILVVDDEPNYLIVLSELLRDEDLEVFTAGSGKAGLDICREVDLDLVITDMQMDGMDGMAL
LEQIKELNPDLPVLIMTAHAEVEKAVKAMQAGAFGYLAKPFANDELLVNIYRAARHYSLIRENKRLRHQLQSEDCFSGIV
GKSPSMQRVYKLIRKVAPTPASVLITGESGTGKELVAQAVHSTSPRRDEAFIAVNCAALSANLLESELFGHEKGAFTGAA
SMRKGRFELAAGGTIFLDEISEIPLELQSKLLRILQEKSFERVGGAKTLHVDVRVISASNKDLKEEVAAGHFREDLFYRL
NVIHLNLPPLRERLDDLPLLVAFFIEKYRKILQLENLVVGEEAMKLLLRLPWDGNVRELENTIERAAILCDAGNIMVEDV
QPETVYNKEDHWQPGGDLSNFIPESVGLNEVLYAVEERMLIKALDESNQVQARAASQLGITKSLLQYKLKKYGLKKKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-42 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DP2235 YP_065971.1 Ntr family protein two-component system response regulator BAC0467 Protein 4e-66 48
DP2235 YP_065971.1 Ntr family protein two-component system response regulator BAC0089 Protein 3e-66 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DP2235 YP_065971.1 Ntr family protein two-component system response regulator VFG1249 Protein 2e-62 46
DP2235 YP_065971.1 Ntr family protein two-component system response regulator VFG0116 Protein 2e-50 43