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Name : clpC (Lxx21340) Accession : YP_062934.1 Strain : Leifsonia xyli CTCB07 Genome accession: NC_006087 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2194841 - 2197360 bp Length : 2520 bp Strand : - Note : identified by sequence similarity DNA sequence : ATGTTCGAGAGATTCACCGATCGCGCCCGCCGCGTCGTCGTCTTGGCCCAGGAAGAGGCCAAGATGCTCAACCACAACTA CATCGGCACGGAGCACATCCTGCTCGGTCTGATCCACGAGGGTGAGGGCGTCGCCGCGAAGGCGCTCGAGTCGCTGGGGA TCTCGCTGGATGCCGTGCGCGAGCAGGTCCAGGACATCATCGGCCAGGGCCAGCAGCAGCCGACCGGGCACATCCCGTTC ACTCCGCGCGCGAAGAAGGTGCTGGAGCTCAGCCTGCGCGAGGCGCTCCAGCTCGGCCACAACTACATCGGCACCGAGCA CATCCTGCTCGGTCTCATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTGCTCGTCAAGCTCGGCGCGGACCTCAACCGCG TGCGCCAGCAGGTCATCCAGCTGCTCTCCGGCTACCAGGGCAAAGAGCAGGTCCAGGTGGGCGGCAACGATCAGGCGACC GCGCAGGCCGGCAGCCAGATCCTCGACCAGTTCGGCCGCAACCTCACGCAGGCCGCGCGCGACAACAAGCTCGACCCGGT GATCGGGCGCGAGAAGGAGATCGAGCGCGTCATGCAGATCCTGTCGCGCCGCTCCAAGAACAACCCGGTGCTGATCGGTG AGCCCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCCCAGGCGATCGTGCGCGGGGACGTGCCGGAGACGCTGAAG GACAAGCAGCTCTACACGCTCGACCTCGGCTCGCTCATCGCCGGCTCCCGCTACCGCGGCGACTTCGAGGAGCGCCTGAA GAAGGTCACCAAGGAGATCCGCACCCGCGGCGACATCATAACGTTCATCGACGAGATCCACACGCTCGTCGGCGCGGGCG CTGCGGAGGGCGCGATCGACGCGGCCAGCATCTTGAAGCCGCTGCTGGCCCGCGGCGAGCTGCAGACCATCGGCGCGACC ACGCTCGACGAGTACCGCAAGCACTTCGAGAAGGATGCCGCGCTGGAGCGCCGGTTCCAGCCCATCCAGGTGAACGAGCC GTCGCTGCCGCACACGATCAACATCCTGAAGGGGCTGCGCGACCGCTACGAGGCGCACCACAAGGTGTCGATCACGGACG GGGCGATCGTCTCCGCTGCGAACCTCGCGGACCGCTACATCCAGGACCGCTTCCTGCCGGACAAGGCCATCGACCTGATC GACGAGGCCGGCGCGCGCCTGCGCTTGTCGATCCTGTCGGCGCCGCCGGAGCTGCGCAAGTTCGACGACAAGATCGCCGT GGTGCGCTCCCAGAAGGAAGCAGCCATCGAGGACCAGGACTTCGAGAAGGCCGCCAGCCTGCGCGACGAGGAGAAGAACC TCCTCGGCGAGCGGCTGCGACTGGAGAAGCAGTGGCGCTCCGGCGACGTGAAGACCACGGCCGAGGTGGATGAGGGACTC ATCGCCGAGGTGCTGGCCCAGGCCACGGGCATCCCGGTGTTCAAACTCACCGAGGAGGAGTCCGCTCGCCTCGTCTTCAT GGAGAAGGCGCTGCACCAGCGGGTCATCGGTCAGGAGGAGGCCATCGCGGCGCTCTCCAAGACGATCCGCCGCACCCGTG CCGGTCTCAAGGACCCGAAGCGTCCCTCCGGCTCGTTCATCTTCGCCGGGCCGACCGGCGTCGGCAAGACGGAGCTGGCC AAGGCGCTCGCCGAGTTCCTGTTCGACGACGAGACGGCCATGATCTCCCTCGACATGTCTGAGTACGGCGAGAAGCACAC CGTCTCCCGCCTGTTCGGCGCGCCTCCCGGGTTTGTCGGCTTCGAGGACGGCGGCCAGCTCACCGAGAAGGTCCGCCGCA AGCCGTTCAGTGTCGTGCTGTTCGATGAGATCGAGAAGGCGCACCCGGACATCTTCAACTCGCTGCTCCAGATTCTGGAG GAGGGACGTCTGACGGACGGCCAGGGTCGCGTCGTCGACTTCAAGAACACCGTGATCATCATGACCACGAACCTCGGCAC GAAGGACATCTCCGGGGCCCCTGTCGGCTTCCAGATCGAGGGCGACCCGACCACCGGCTACGACCGGATGCGCGGCAAGG TGTACGAGGAGCTGAAGAAGAACTTCAAGCCCGAGTTCCTGAACCGCGTGGACGAGATCATCGTCTTCCCTCAGCTGAGC AAGCCGGAGCTGCTGCAGATCGTGGATCTGTTCATCAAGCGGCTGTCCGACCGCCTGCTCGACCGGGACATGACGATCGA GCTCGAGATTGCGGCGAAGGAGCGGCTGATCGAGGTTGGGTTCGATCCGACCCTCGGCGCCCGTCCGCTGCGCCGCGCGG TGCAGCACGAGATCGAGGACCGGCTGAGCGAGAAGATCCTGCACGGCGAGCTGAGCGCGGGCGACCACGTGCATGTGGAC TTCGTCGACGGAGAGTTCGTGTTCACGACGACCGCGCGCACGGAGCCGATCGGCGCGGGGATCAACGCCGCCGCCATTGG CACCGGTCCTGCCACCCCCGATATCGCCGCCAGCCACTGA Protein sequence : MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVREQVQDIIGQGQQQPTGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEQVQVGGNDQAT AQAGSQILDQFGRNLTQAARDNKLDPVIGREKEIERVMQILSRRSKNNPVLIGEPGVGKTAVVEGLAQAIVRGDVPETLK DKQLYTLDLGSLIAGSRYRGDFEERLKKVTKEIRTRGDIITFIDEIHTLVGAGAAEGAIDAASILKPLLARGELQTIGAT TLDEYRKHFEKDAALERRFQPIQVNEPSLPHTINILKGLRDRYEAHHKVSITDGAIVSAANLADRYIQDRFLPDKAIDLI DEAGARLRLSILSAPPELRKFDDKIAVVRSQKEAAIEDQDFEKAASLRDEEKNLLGERLRLEKQWRSGDVKTTAEVDEGL IAEVLAQATGIPVFKLTEEESARLVFMEKALHQRVIGQEEAIAALSKTIRRTRAGLKDPKRPSGSFIFAGPTGVGKTELA KALAEFLFDDETAMISLDMSEYGEKHTVSRLFGAPPGFVGFEDGGQLTEKVRRKPFSVVLFDEIEKAHPDIFNSLLQILE EGRLTDGQGRVVDFKNTVIIMTTNLGTKDISGAPVGFQIEGDPTTGYDRMRGKVYEELKKNFKPEFLNRVDEIIVFPQLS KPELLQIVDLFIKRLSDRLLDRDMTIELEIAAKERLIEVGFDPTLGARPLRRAVQHEIEDRLSEKILHGELSAGDHVHVD FVDGEFVFTTTARTEPIGAGINAAAIGTGPATPDIAASH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 72 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_062934.1 | ATP-dependent Clp protease, ATP-binding subunit | VFG0079 | Protein | 0.0 | 59 |
| clpC | YP_062934.1 | ATP-dependent Clp protease, ATP-binding subunit | VFG0080 | Protein | 3e-155 | 52 |
