Gene Information

Name : smpB (ACIAD2894)
Accession : YP_047438.1
Strain : Acinetobacter sp. ADP1
Genome accession: NC_005966
Putative virulence/resistance : Unknown
Product : SsrA-binding protein
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0691
EC number : -
Position : 2833163 - 2833639 bp
Length : 477 bp
Strand : +
Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca

DNA sequence :
ATGTCGAAAGCAGTAGTAGTTAAAAAAAATAATGGCGGTACCATTGCGCAGAATAAACGCGCCCGACACGATTATTTTAT
TGAAGAAAAATTTGAAGCAGGTATGTCTTTGCAAGGCTGGGAAGTAAAATCCTTGCGTGCAGGTCGTATGAGCCTTACCG
AAAGCTATATCATCTTTAAAAATGGTGAAGCCTACCTATTTGGTGCTCAAATTCAACCGTTGCTTACCGCATCGAGCCAT
GTTGTGCCTGAAGCCACACGGACACGTAAATTACTACTGTCACGTCGTGAAATTGGTCAACTACTAGGTGCTGTCAATCA
GAAAGGTTATTCGTGTGTACCTTTGGCATGTTACTGGAAAGGTCACTTGGTCAAGCTCGAAATTGCACTGGTGAAAGGGA
AACAGTTACATGATAAGCGTGCAACCGAAAAAGATCGTGACTGGCAACGTGACAAAGCACGGATTATGCATAAGTAA

Protein sequence :
MSKAVVVKKNNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMSLTESYIIFKNGEAYLFGAQIQPLLTASSH
VVPEATRTRKLLLSRREIGQLLGAVNQKGYSCVPLACYWKGHLVKLEIALVKGKQLHDKRATEKDRDWQRDKARIMHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
smpB NP_230495.1 SsrA-binding protein Not tested VPI-1 Protein 2e-39 54
unnamed AET14351.1 SsrA-binding protein Not tested SaPI68111 Protein 6e-20 43