|
Name : lysS (ACIAD1069) Accession : YP_045778.1 Strain : Acinetobacter sp. ADP1 Genome accession: NC_005966 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1064137 - 1065666 bp Length : 1530 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGGCGCAACCAAACGTTCAATCGACTTCCGAACCTATTCTTTCCGAAAACGATTTAATTGCACAGCGTCATGCCAAATT AAAACAAATTCAAGACAAAGCCAAAGAAACTGGCAAAAGCGTTTGGCCGAATACCTTTAAACGTGAGCATTATGCTGCTG ACCTGCAAGAGCAGTTTAAAGATATTGATAAGGCACAGATTGAAGGTTCAGACAAAACCTATGTAAAAGTTGCTGGTCGT GTCATGCTCAATCGTGGATCATTTATGGTGATCCAGGATATGACGGGTCGTATCCAGCTCTACGTTGACCGTAAAGGCCT ACCAGCAGATACTTTAGAAACCATTAAGAGTCTTGACCTTGGCGATATTATTGCTGCGGAAGGTTATATTGGGCGTTCGG GTAAAGGTGATCTATATGTTCACCTTGAAGGTTTTGAGTTATTAACCAAGTCTTTGCGTCCACTACCAGATAAGTTTCAT GGTCTGACTGATACAGAGGCGAAATATCGCAAGCGTTATCTTGATTTGATCGTGAACGAAGAAACACGTAAAACGTTTGA GATTCGTGCTCAAGTTGTTGCTGGTATTCGTGCATTTTTGACCAATCAACGTTTTATGGAAGTTGAAACGCCAATGATGC ATGTGATTCCAGGTGGTGCATCTGCACAACCATTTGTGACACATCATAATGCTTTGGATATGGAGCTGTATTTACGTATT GCACCAGAACTTTATCTTAAGCGTTTGGTTGTGGGTGGTTTTGAGCGTGTCTTTGAAATCAACCGTAACTTCCGTAATGA AGGGGTTTCAACACGTCATAATCCTGAATTTACCATGATTGAGTTTTATCAGGCATATGCAGATTATAAAGATTTAATGC AACTGACTGAAAATATGCTTGAAAAACTTGCATTAGATATTTTGGGAACAACCGATGTTCCTTATGGCGATGAAGTGTAT AGCTTTAAAGGGCCATTCAAAAAAATCTCGATGTTTGATGCGATTTTGGAACATAACCCAGATTTCACCCCTGAAAATGT CAATGATCGTGAGTTTTTAGCCAAATTCACTCAAGACGTGCTTAAAGAGCAAGTTAAACCTGGTTTTGGTTTAGGCAAGT TACAAACGATTGTGTTTGAAGAAACCGTTGAAACTAAATTGCGTCAGCCTACATTTATTACCGAATATCCAGCAGAAACC TCACCGCTGGCACGTCGTAATGATGATAATCCTCACATCACAGACCGTTTCGAATTCTTTATTGGTGGTCGTGAACTTGC AAATGGTTTCTCGGAGCTGAATGATCCGATTGATCAGGCAGAACGTTTTCAGGCTCAAGTTGCCGAAAAAGATGCAGGTG ATGATGAAGCCATGCATTATGATGCAGACTTTATTGAAGCACTTGAATACGGTTTACCGCCAACAGCGGGTCAGGGTATC GGGATTGATCGTCTGGTTATGATTTTTGCCAATGCACCAAGTATTCGTGATGTACTGTTATTTCCGCATATGCGTCGTAA AGATGTATAA Protein sequence : MAQPNVQSTSEPILSENDLIAQRHAKLKQIQDKAKETGKSVWPNTFKREHYAADLQEQFKDIDKAQIEGSDKTYVKVAGR VMLNRGSFMVIQDMTGRIQLYVDRKGLPADTLETIKSLDLGDIIAAEGYIGRSGKGDLYVHLEGFELLTKSLRPLPDKFH GLTDTEAKYRKRYLDLIVNEETRKTFEIRAQVVAGIRAFLTNQRFMEVETPMMHVIPGGASAQPFVTHHNALDMELYLRI APELYLKRLVVGGFERVFEINRNFRNEGVSTRHNPEFTMIEFYQAYADYKDLMQLTENMLEKLALDILGTTDVPYGDEVY SFKGPFKKISMFDAILEHNPDFTPENVNDREFLAKFTQDVLKEQVKPGFGLGKLQTIVFEETVETKLRQPTFITEYPAET SPLARRNDDNPHITDRFEFFIGGRELANGFSELNDPIDQAERFQAQVAEKDAGDDEAMHYDADFIEALEYGLPPTAGQGI GIDRLVMIFANAPSIRDVLLFPHMRRKDV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-130 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_045778.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-130 | 56 |
