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Name : DVUA0104 (DVUA0104) Accession : YP_009144.1 Strain : Genome accession: NC_005863 Putative virulence/resistance : Virulence Product : type III secretion inner membrane protein HrcV family Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 140328 - 142421 bp Length : 2094 bp Strand : - Note : identified by similarity to SP:P31487; similarity to SP:P35533; match to protein family HMM PF00771; match to protein family HMM TIGR01399 DNA sequence : ATGAGCATGCTCGCCCGCGCCAATACCGCCGTGGGGGCTGTCACCCGGCACAACGACCTCGCCATCGTGCTGCTGCTGGT GGTGGTCATCGCCCTGATGATCCTGCCGCTGCCCACGCCGCTGGTCGACACGCTCATCGGCGCCAACATGGCGCTCTCGT TCGTGATGCTGATGATGTCGATGTACGTGAAGTCCATCCTCGACTTCTCGGTCTTCCCCACCATGCTGCTCTTCACCACG CTCTTCCGCGTGGGTCTCAACATCACCACCACCCGCCTCATCCTGTTGCAGGCAGACGCGGGCGAGATCATCTTCGTCTT CGGCGAATACGCGCTGGGCGGCAACTTCGTGGTGGGCGCGGTGGTCTTCGTCATCCTCACCATCGTGCAGTTCCTCGTCA TCGCCAAGGGCGCGGAACGCGTGGCCGAGGTGGGGGCGCGCTTCACGCTGGACGCCATGCCCGGCAAGCAGATGTCCATC GACGCCGACATGCGCGCCGGGGTCATCGACATGGAAGAGGCGCAGCGCAGGCGCAACACCGTGTCGCAGGAAAGCCAGAT GTACGGCGCCATGGACGGCGCCATGAAGTTCGTCAAGGGCGACAGCATCGCGGGCATGATCGTCGCGCTGGTCAACATCG TGGGCGGCACGGTCATCGGCATCACGCAGCACGGCATGGCGGCGGGCGAGGCGCTGCACACCTACGGCATCCTCACCATC GGTGACGGTCTTGTATCGCAGATACCCTCGCTGCTGGTGTCCATCTCCGCGGGCATTCTCATCACCCGGTCGGGCGATTC GGGCGGCAACGTGGGGGCGCAGATTGGCGGGCAGATTTTCGGACAGCCCAAGGCCCTGCTCATGGCGGGGGGGCTGGTCT TTCTCTTCGCGCTGGTGCCCGGCTTCCCCAAGCCGCAGCTGATGGGGCTGGCGCTGGCCCTCGGCGGTTTCGGCTACGTG CTGCGCCGCATGGCGGAGTTGCCCGCAGAGACCGACCCGCGCGCCGAACTCTCGCGCTCGCTGGCACCGGCGGTGAAGCC GCGCCCCGCACGGGGCGGCGCACAGCAGGGCGACGACTTCGCCCCCACCGTGCCCATCATCCTCGACCTCTCTCCGGCCC TTGGCGAGAGCCTCGACTACGACTCGCTCAACGATGAACTGGCGCGGCTGCGCCGTGCGCTGTACTTCGACCTAGGGGTG CCCTTTCCGGGCATCAACGTGCGCCCCAACCCCGCGCTGCCGGGGCTGTGCTATGTGCTGAACCTCAACGAGATACCCAT GTCGCGCGGGGTGCTCGAGAAGGGCATGAGCCTCGTGCGCGACACCCGCGAGAACCTCGCCATGATGGGCGTCGCCGTGC GCGAGGGCGAACGCTTCCTGCCCGAGGTCGAACCGCTGTGGGTGCCCGACGAGCAATGCCGCCTGCTTGAGAAGGCGGGC ATCGGGCACATGTCGCATGCGCGCATTCTCGCGTACCATCTTTCGCTGGTGCTTTCGCGCCACGCCTCCACCTTCATCGG CATGCAGGAGGCCAAGTACCTTCTCGACCGCATGGAGGAGAGGGCACCCGACCTCGTGCGCGAAGTCACCCGCCTGCTGC CCGTGCAGCGCATCGCAGAGATTTTCCAGCGGCTGGTGCAGGAACAGGTCTCCATACGCGACCTGCGCAGCATCCTCGAA GCACTCATCGAATGGAGTGCCAAGGAGAAGGACACGGTCATGCTCACCGAGTATGTCCGCAGCGCACTCAAGCGGCAGAT AAGCTACATGCACTCGCGCGGGCAGAACATGCTGCCCGCCATCCTGCTCGACCCCGGCGTGGAGGAGACCATCCGCAAGG CCGTCCGGCAGACCTCCGCAGGGGCCTTCCTCGCGCTGGAACCCGCCGTGACCGAACGGTTCATGAAGGCGGTTGCCGAT GCCGCAGGGCCGTATGCCCAGCAGACGCAGAAGCCCGTCATCATGACCTCGATGGATATCAGACGGTATGTGCGGCGTCT CATCGAAGGCGACCACTACACCCTCGCCGTCATGTCGTATCAGGAGCTTACGCCAGAGATTTCGGTGCAACCCGTGAACA GGATACGCCTGTAA Protein sequence : MSMLARANTAVGAVTRHNDLAIVLLLVVVIALMILPLPTPLVDTLIGANMALSFVMLMMSMYVKSILDFSVFPTMLLFTT LFRVGLNITTTRLILLQADAGEIIFVFGEYALGGNFVVGAVVFVILTIVQFLVIAKGAERVAEVGARFTLDAMPGKQMSI DADMRAGVIDMEEAQRRRNTVSQESQMYGAMDGAMKFVKGDSIAGMIVALVNIVGGTVIGITQHGMAAGEALHTYGILTI GDGLVSQIPSLLVSISAGILITRSGDSGGNVGAQIGGQIFGQPKALLMAGGLVFLFALVPGFPKPQLMGLALALGGFGYV LRRMAELPAETDPRAELSRSLAPAVKPRPARGGAQQGDDFAPTVPIILDLSPALGESLDYDSLNDELARLRRALYFDLGV PFPGINVRPNPALPGLCYVLNLNEIPMSRGVLEKGMSLVRDTRENLAMMGVAVREGERFLPEVEPLWVPDEQCRLLEKAG IGHMSHARILAYHLSLVLSRHASTFIGMQEAKYLLDRMEERAPDLVREVTRLLPVQRIAEIFQRLVQEQVSIRDLRSILE ALIEWSAKEKDTVMLTEYVRSALKRQISYMHSRGQNMLPAILLDPGVEETIRKAVRQTSAGAFLALEPAVTERFMKAVAD AAGPYAQQTQKPVIMTSMDIRRYVRRLIEGDHYTLAVMSYQELTPEISVQPVNRIRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 5e-165 | 53 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 6e-105 | 44 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 8e-104 | 44 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 1e-103 | 44 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 6e-105 | 44 |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 2e-104 | 43 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 2e-104 | 43 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-104 | 43 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 8e-108 | 43 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 4e-103 | 42 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 2e-99 | 41 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 4e-99 | 41 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 4e-99 | 41 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 1e-99 | 41 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 2e-99 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| DVUA0104 | YP_009144.1 | type III secretion inner membrane protein HrcV family | VFG0064 | Protein | 1e-170 | 56 |
| DVUA0104 | YP_009144.1 | type III secretion inner membrane protein HrcV family | VFG0384 | Protein | 1e-164 | 54 |
| DVUA0104 | YP_009144.1 | type III secretion inner membrane protein HrcV family | VFG0198 | Protein | 2e-157 | 53 |
| DVUA0104 | YP_009144.1 | type III secretion inner membrane protein HrcV family | VFG2126 | Protein | 6e-125 | 45 |
| DVUA0104 | YP_009144.1 | type III secretion inner membrane protein HrcV family | VFG2461 | Protein | 6e-105 | 42 |
| DVUA0104 | YP_009144.1 | type III secretion inner membrane protein HrcV family | VFG0514 | Protein | 7e-100 | 41 |
