|
Name : sctV (pc0749) Accession : YP_007748.1 Strain : Candidatus Protochlamydia amoebophila UWE25 Genome accession: NC_005861 Putative virulence/resistance : Virulence Product : type III secretion pathway protein SctV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 924380 - 926560 bp Length : 2181 bp Strand : - Note : strongly similar to type III secretion pathway protein SctV DNA sequence : ATGAATGCCATTCGTAAAATCCTAGATGGAATTACAGCTCGATTAGGCGGAGATCGCTCGCTCGAAGCAATTTCGAAATC CAGCGACATTGCATTAGCCGTTTTAATCATCGGTATTCTTGTTATGATTATTTTTCCTGTCAATCCCCATGTGATTGACT ATTTAATCGCTATCAATCTTTCTTCTTCAATTGCCCTTTTAATGGTTGCTCTTTACATTCCAAGCGCTGTTCATTTGTCT ATTTTTCCTTCTCTGCTTTTGATTACCACGTTATACCGCTTAGGATTAAATATTGCTTCTACTAGACAAATTCTTTTACA CGCTAATGCTGGAGAAATCATTTTCCAGTTCGGTAACTTCGTCGTTGGAGGAAATTTCGTCGTTGGAGGCGTTATCTTCT TAATTATCACTTTAGTTCAGTTCTTAGTGATCACAAAAGGGGCAGAAAGAGTCGCCGAAGTCGCTGCCCGTTTTACATTG GATGCGATGCCTGGTAAACAAATGAGCATCGACGCAGACATGCGTGCAGGAATTTTGGATTCCAATCAAGCTCGCGAAAA AAGATTAGCCATCCAAAGAGAGAGTCAATTATATGGAGCAATGGACGGGGCAATGAAGTTCGTTAAAGGAGATGCGATTG CAGGTATCGTCATTACTTTAATTAATGTTATTGGTGGAATGATCATCGGAATGACCATGAATGAAATGGAAGCAAGTGAT GCAGCCAAAACTTATGCGTTATTATCTATTGGAGATGGATTGATCTCTCAAATTCCCGCTCTTTTAATTTCGATTACTGC CGGTATTGTGACAACTCGTGTTTCTGGAAGCGAAAAAGTTGAAAATTTAGGGACTGAAATCTCTGGTCAAATTTTAAAAC AACCTAAAGCTCTTATGATTACCGCCGCATTTTTGATGGGCATGAGCTTGGTTCCCGGTTTTCCGATGCCTCCTTTTCTA ATTGCTGCTGCTGCACTTGGTTTGATTGGTTATGCTTTATGGAGCAATGAACAAAAAGCCTTGTTAGGTGGAGGAAGCGT TGGTTCCATGGGTGGAGGGACAATTCAGTCTGCCGCTGGTAGCGATTCTTCAGTAGAAACCTCTGTAAGAGGTCATAAAG TTATCTCTGGGGGTGGAGTTGACAGCTATGCATTAACACTCCCAGTCGTATTAGAGGTTGGCAGAGGGTTGTCTATAGAA ATTCAAAAAGCAAATAAAGGGACAAGCTTTATCGATCAAATGATTCCCAAAATGAGACAAGCACTTTACGCCGATTTAGG AGTTCGTTTTCCCGGTGTACATGTGCGAACTGACTCACCCATTTTAGATAAAGATGAATACTCAATTCACTTAAATGAAG TTCCCATTGTGCGAGGAAAAGTTTTAGAAAATCATCTACTTACCAATGAATCGGAAGAAAACCTTAAACGTTATAATCTT CCTTTCGTTTCTTATAAAAACTCGTTAGGTCTTCCTTCTCTTTGGGTGGATGCAAAAAACAAAGAGCTATTAGATAAAGC TGGAATCCGTTACTGGAGCTCTTTGGAAGTGATGATCTTACATTTATCTTACTTCTTCCGTCATTATGCGAATGAATTTG TTGGAATTCAAGAAGTTAAATCGATGTTAGAGTTTGTTGAAAAATCTTTTCCCGATCTCGTCAAAGAAGTCACACGTTTG ATACCGCTTCAAAAAATGACAGATATTTTCAAACGTTTGATCCAAGAGCAAATTTCGATCAAAGATTTAAGAACAATTTT AGAAGCCCTTGGTGAGTGGGCCCAAACTGAAAAAGATACCGTTCTTTTGACAGAATACGTCCGCTCATCGCTCAAAAGGT TTATTAGCTATAAATATTCTCAGGGTCAGTCCGTTCTATCAGTCTATATTTTAGACCCTGAAATTGAAGATATGGTAAGA GGTGCCATTAAACAGACATCAGCCGGGTCTTATTTAGCCCTAGATCCTGATTCTGTTCAACTTATTTTACAAGGTGTACG CAATACGGTATCTCCTCCTCCTCCCGGTGGACAACCGCCCGTTATTTTGACTGCAATCGACGTGAGACGATTCGTTCGAA AACTCATTGAAATGGAATTTACTGATATTTCTGTGGTTTCTTACCAAGAGATTGTTCCTGAAATCCGCATACAGCCTTTA GGGCGTATCCAGATTTCTTAA Protein sequence : MNAIRKILDGITARLGGDRSLEAISKSSDIALAVLIIGILVMIIFPVNPHVIDYLIAINLSSSIALLMVALYIPSAVHLS IFPSLLLITTLYRLGLNIASTRQILLHANAGEIIFQFGNFVVGGNFVVGGVIFLIITLVQFLVITKGAERVAEVAARFTL DAMPGKQMSIDADMRAGILDSNQAREKRLAIQRESQLYGAMDGAMKFVKGDAIAGIVITLINVIGGMIIGMTMNEMEASD AAKTYALLSIGDGLISQIPALLISITAGIVTTRVSGSEKVENLGTEISGQILKQPKALMITAAFLMGMSLVPGFPMPPFL IAAAALGLIGYALWSNEQKALLGGGSVGSMGGGTIQSAAGSDSSVETSVRGHKVISGGGVDSYALTLPVVLEVGRGLSIE IQKANKGTSFIDQMIPKMRQALYADLGVRFPGVHVRTDSPILDKDEYSIHLNEVPIVRGKVLENHLLTNESEENLKRYNL PFVSYKNSLGLPSLWVDAKNKELLDKAGIRYWSSLEVMILHLSYFFRHYANEFVGIQEVKSMLEFVEKSFPDLVKEVTRL IPLQKMTDIFKRLIQEQISIKDLRTILEALGEWAQTEKDTVLLTEYVRSSLKRFISYKYSQGQSVLSVYILDPEIEDMVR GAIKQTSAGSYLALDPDSVQLILQGVRNTVSPPPPGGQPPVILTAIDVRRFVRKLIEMEFTDISVVSYQEIVPEIRIQPL GRIQIS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 1e-136 | 49 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 3e-93 | 43 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 3e-97 | 41 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-97 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctV | YP_007748.1 | type III secretion pathway protein SctV | VFG2126 | Protein | 0.0 | 64 |
| sctV | YP_007748.1 | type III secretion pathway protein SctV | VFG0198 | Protein | 2e-132 | 48 |
| sctV | YP_007748.1 | type III secretion pathway protein SctV | VFG0064 | Protein | 2e-137 | 47 |
| sctV | YP_007748.1 | type III secretion pathway protein SctV | VFG0384 | Protein | 4e-137 | 47 |
