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Name : serS (pc1488) Accession : YP_008487.2 Strain : Candidatus Protochlamydia amoebophila UWE25 Genome accession: NC_005861 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1770921 - 1772201 bp Length : 1281 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGATTGATATTCGCTTAATCCGTAAAGATCGTTTTGCAGTTGAGAAACAGTTAAAAACGAAAGATCCGCAAATTGATCT TACTAATATTTGTCACCTCGATCATTCTATTCGCGAAGCTAAAACAAAAGTTGAAACTCTCAAGGCAAAACGTAATGAGA TTTCTCAGAAAATCGGAGAAATGAAACGGGCTAACCAAGATACTTTTTCTTTAATGAATGAAGTAGCAGGATTTGGAACA GAAATTCATTTTTTGGATAACCAAATTAAAGAATGGGAAGAACAATTTAATTATGAGTTATCTAGCTTACCTAATCTTCC CATGGAAGATATTAAAATCTCTCAAGATCCTAAAGAAAATGTTGTTATCAAAGAGTTTGGACAAAAACCTATTTTTTCTT TTCCATTCAAAAATCACGTAGAACTTAATGAAAAATTAAATTTATTTGATTTTAAGCGTGGAGCTAAAATTTCTGGAACA GGCTGGCCCGTTTATCGAGCCATGGGAGCACGTCTAGAATGGGCCCTCATCCAATATATGATCGAAATTCACGTCAAAAA TGGATTTACACAATGGATCCCTCCCCTTCTTGTTAGAAAAAATACTGTGTTTGGATCTGGACAATTACCTAAATTTGAAA GTCAACAATTTAAAATTCAAGATGAGGATTATCATCTTTATTTAATTCCTACAGCCGAAGTTCCTCTTAATGGATTGCAT ATGGATGAGATTATTCCTCAAGAAGAGCTCAGTCTAAAATATGTAGCCTACACCCCTTGTTTTAGGCGTGAAGCAGGAGC AGCAGGATCGCAAGAACGTGGTCTAATTAGAATGCATCAATTTAATAAAGTCGAAATGTTTTGCTTTACAAAACCGGAGG AAAGCGCACAAGTATTCAATCAAATGATGGATAGCGCAGAGGAAATTTTGCAAGGCTTAGAACTCCATTATCGTAATGCT TTACTAGTAACTGGGGACATGTCTTTCGCTGCAGCGCGCACAATAGACATTGAAGTTTGGTTACCCGGACAAAACAGATA TTATGAAGTCTCTTCTGTATCTAATTGTACAGATTATCAATCCCGTCGTTCTAATACACGTTTTAGACGCGAAGACGGAA AGTTAGATTTTGTTCATACCCTTAATGGTTCTGGATTAGCGACTTCTCGATTAATGGTTGCTTTATTAGAAAATAATCAG CGGGAAGATGGCTCTGTTTGTATTCCTAATGTCTTACAACGCTATTTAAACGGACAAAGCACATTGAATCCCACAATTTG A Protein sequence : MIDIRLIRKDRFAVEKQLKTKDPQIDLTNICHLDHSIREAKTKVETLKAKRNEISQKIGEMKRANQDTFSLMNEVAGFGT EIHFLDNQIKEWEEQFNYELSSLPNLPMEDIKISQDPKENVVIKEFGQKPIFSFPFKNHVELNEKLNLFDFKRGAKISGT GWPVYRAMGARLEWALIQYMIEIHVKNGFTQWIPPLLVRKNTVFGSGQLPKFESQQFKIQDEDYHLYLIPTAEVPLNGLH MDEIIPQEELSLKYVAYTPCFRREAGAAGSQERGLIRMHQFNKVEMFCFTKPEESAQVFNQMMDSAEEILQGLELHYRNA LLVTGDMSFAAARTIDIEVWLPGQNRYYEVSSVSNCTDYQSRRSNTRFRREDGKLDFVHTLNGSGLATSRLMVALLENNQ REDGSVCIPNVLQRYLNGQSTLNPTI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 8e-81 | 43 |
