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Name : lysS (pc1228) Accession : YP_008227.1 Strain : Candidatus Protochlamydia amoebophila UWE25 Genome accession: NC_005861 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1462049 - 1463638 bp Length : 1590 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGAGTTTTATGACAAAAAAACCTGATTATCACCAACATGAAGAATACCAAAATCGCTTACGTAAACTTGTTGAAATACG TCAATGCAAGATAGATCCTTATCCCGCTAAATATACACCAACTCATACAGCAGAATCTCTTCATCAAGAATACGATACAA AACAAATTGGACATAGTGAAGATGCAGCTTCAGGATCCACACCTTTTGTTTGTTTGGCTGGCCGTCTTGTCCTTTTTCGT TCCATGGGAAAAAATGCCTTTGGTCATCTACAAGATGAAACAGGACGCATACAAATCATGTTTAATCGGGACCAAACGCT AGTCACGAACTTTGAACCTAGTTCTGAAGAACCCGAATTATCTCCATATAAATTTATCGAAAAAAAAATCGATCTCGGAG ATATCATTGGAGTTGAAGGCTACTTATTCCATACTCAAAAAGGAGAACTAACTGTTTTTGTCAAACAGCTGACTCTTCTT TGTAAAACTCTACTTCCGCTTGCCGATAAACATGGTGGACTGGCTGATAAAGAATTGCGTTATCGTAAACGTTGGTTAGA TTTGATTTCCCATTTAGATGTAGCTAAAGTTTTTCGTATCCGTAGTCATATCTTGAAAGAAATCCGATCTTACTTTGACC AGTATCAATTCCTAGAAGTAGAAACACCAATCCTACAAAGCATTTATGGAGGAGCAGAAGCCCGCCCCTTTATCACAAAA TTAAATGCGCTGGATCAAGAAATGTTTTTACGCATTTCTTTAGAAATTCCTCTTAAAAAGTTAATTGTAGGAGGGATGCA TAAAGTTTATGAAATGGCACGTGTATTTCGTAATGAAGGCATTGATCGCAATCATAATCCTGAATTTACCTTGTTAGAAG CTTATGCTTCCTATTGGGATTATTTCGATATGATGAACTTTGTGGAAAATCTTTTCGAAAAGCTTGCTCTAGACCTCTAT GGAACCACGAAAGTTCCTTATACAGCACATGAAGGAGCTGAAACAATTTATATCGATATGAAAGCTCCTTGGATTCGATT GACTATGAAAGAAAGCATTAAAAAATATGCTAATCTCGATCCTAATGTTTTATCTGATGAAGAGATGCGACATTTATTGC TCGAGAGTGCACATTGTGATCCTAAAAAAATTAAAGGATTGAGTCGCGGACTTCTGATTGCGGCTTTATTTGAGGTTTTT GTAGAACCTCATTTAATTCAACCCCACCACATTTACGACCATCCCATTGAGACAACGCCTCTTTGTAAACCACATCGTGA TCTTAAATACCGCGAAGAAGGACTTGTTGAACGTTTTGAAAGTTTTATTTTAACACAAGAAGTGTGCAATTCTTACAGCG AATTGAACGATCCTGAAATTCAACGTCATTTGCTTGAGCTACAGTCAGATCGCCGTGAAGCTGGTGATGAAGAAGCTAGT CCCTTGGATGAAGAATTTATTGAAGCGATTTGCCAAGGTATGCCTCCCACAGGGGGAATTGGAATTGGAATTGACCGACT GGTAATGATATTAACTAATTCTCATTCGATTCGGGATGTCCTTTATTTTCCTTGGATGAAAACAATTTAA Protein sequence : MSFMTKKPDYHQHEEYQNRLRKLVEIRQCKIDPYPAKYTPTHTAESLHQEYDTKQIGHSEDAASGSTPFVCLAGRLVLFR SMGKNAFGHLQDETGRIQIMFNRDQTLVTNFEPSSEEPELSPYKFIEKKIDLGDIIGVEGYLFHTQKGELTVFVKQLTLL CKTLLPLADKHGGLADKELRYRKRWLDLISHLDVAKVFRIRSHILKEIRSYFDQYQFLEVETPILQSIYGGAEARPFITK LNALDQEMFLRISLEIPLKKLIVGGMHKVYEMARVFRNEGIDRNHNPEFTLLEAYASYWDYFDMMNFVENLFEKLALDLY GTTKVPYTAHEGAETIYIDMKAPWIRLTMKESIKKYANLDPNVLSDEEMRHLLLESAHCDPKKIKGLSRGLLIAALFEVF VEPHLIQPHHIYDHPIETTPLCKPHRDLKYREEGLVERFESFILTQEVCNSYSELNDPEIQRHLLELQSDRREAGDEEAS PLDEEFIEAICQGMPPTGGIGIGIDRLVMILTNSHSIRDVLYFPWMKTI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-72 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_008227.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-72 | 43 |
