|
Name : smpB (TTC0546) Accession : YP_004521.1 Strain : Thermus thermophilus HB27 Genome accession: NC_005835 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 532455 - 532889 bp Length : 435 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCCCCCGTGCTGGAGAACCGCCGCGCGCGGCACGACTACGAGATCCTGGAAACCTACGAGGCGGGCATCGCCCTCAA AGGGACCGAGGTGAAGTCCCTGAGGGCGGGGAAGGTGGACTTCACGGGAAGCTTCGCCAGGTTTGAGGACGGCGAGCTTT ACCTGGAAAACCTCTACATCGCTCCCTACGAGAAGGGCTCCTACGCCAACGTGGACCCGAGGAGGAAGCGGAAGCTCCTC CTGCACAAGCACGAGCTTAGGCGGCTTCTCGGCAAGGTGGAGCAGAAGGGCCTCACCCTGGTCCCCCTCAAGATCTACTT CAACGAGCGGGGGTACGCCAAGGTCCTCCTGGGCCTCGCCCGGGGGAAGAAGGCCTACGAGAAGCGGCGCGAGGACAAGA AGGAGGCGGTGCGCCGCGCCTTGGAGGAGCTATGA Protein sequence : MAPVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLL LHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGKKAYEKRREDKKEAVRRALEEL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-21 | 53 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 1e-21 | 48 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 1e-13 | 42 |
