|
Name : capD (LIC20138) Accession : YP_003529.1 Strain : Genome accession: NC_005824 Putative virulence/resistance : Virulence Product : capsular polysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 163969 - 165858 bp Length : 1890 bp Strand : + Note : - DNA sequence : ATGTTCGCTCAGTGGAATCGAAGAATGTGGATCTTCCCTTTGGATCTCATCTTCATGGGGATCTCTTATTTTTTAGCACA TTGGATTCGCTTTGAGTCGTTTATTTTTCTTGCTTCACCGGAAAGATTTTTTATTTCCTTAGCGATCGTCATCTCGGTTA GATCAATCGTTTTTATTCTATCTGACATCTACAGATCAATTTGGGTGTACGCTTCCATTCACGATCTTGTGGAAATCATC AAGGTTACACTTCTTTCTTCTCTCATTTCTACCACGGCACTTTTGTTTTACAATCGTTTCGAACAGCTGTCGAGAATGGT TCCGGTTTTAGACACACTTCTCCTTTTAAGTTTTTTGTGTATCCGTAGTTTTTCTTGGAGAGTGTTCAGAGATCAGTATA TTCTCAAAAAATCCAAGGAAGAAGGACTTCCCACTTTGATTTTAGGCGCAGGAAAAGTGGGTGCCACTTTACTTTCGGAA ATTAGAAGACACAACGAACTTAAACTCAATCCTGTCGGATTTTTAGATGATAATGTTCAAAAGATAGGAGCCCATATCCA AGGAATTCCTATTTTAGCTAAGATTGATCAGGCGGAACAGATCATCAATCGTTTCGGAGTCAAACAAGTAATCATAGCGA TGAGCAGCCCAGACGGAAAACTCATCAGTCGGTTGATTCGTTCTTTTGAACATACGGACGTGAAGTTCAAAATTCTTCCT TCTTTGGGTTCTTTATTTTTCGATTCTCCTAAATTGAATCAATTGAGAGAGGTTCAAGTAGAAGACTTGCTAGGTCGTCC GGTAGTAGATCTAGAAATAGAATCCATTCGTTCTTATTTAAAAGGAAAGTCCATTTTGGTGTCCGGAGCGGGAGGTTCGA TCGGAAGTGAACTTTGTAGACAGGTTGCAGTTTTTGAACCTTCTAGAATTCTTCTTTTAGATTCTGCAGAAACTCCGTTA TATGAAATTGAATATGAACTAGGAAAAAAATTACAGGGACAAAATATAGAACTCGTTCCAATCGTAGCGGATATTAAGAA CCTTTCCAGAATCAGCTCTATTTTTGAAAAACATTCTCCAGAAGTAGTCTTTCATTCTGCGGCTTACAAACACGTTCCTA TGATGGAAATCAATCCTACCGAAGCTGTGATGAATAACGTTCTTGGAACAAAAAATATCGCGGACATTTCTAGAATTTCG GGTGTGGAACGTTTTGTTCTTATTTCTACGGATAAAGCAGTCAATCCGGTGAATATTATGGGAGCGTCTAAACGAGCAGC CGAATTGTATTTACAACATATTTCTAGAGAAACAAGAACCAAATTCATCACAGTACGATTTGGAAACGTTTTGGGTTCCA ATGGTTCGGTAATTCCAAGATTTAGAGAACAGATCGCAAATGGGGGACCGGTTACGGTTACACATCCCGACGTAATCCGT TACTTTATGACCATACCGGAAGCGACTCAACTTGTACTCCAAGCGGGGAGTATGGGAGAATGTGGTGAGATTTTCATTCT TGAAATGGGAGAACCCGTAAAAATTCTAAACCTTGCAGAAGAAATGATTCGTCTTTGTGGACTTAGACCTCACGTAGACA TACCAATTCAATTCACTGGACTTAGACCTGGAGAAAAATTATTCGAAGAACTTTTGTTAGGTTTAGAAGGGATTAAAAAA ACACATCATCCCAAAATTAAAATTGCCGCCCCTTTAGAAAATCAAGAAGCCACTACATTTGTAGCAAGGTTTAACGAACT TTTGACATTGGCTAGAGCCAATAAGGATAGAGAAATTTTTCTCGCTTTTAAAGCTTTAGTCCCAGAATACAAAATCCACG GGGATTATTTGAACGAGACAAACGCTAATCAAAACCTACAAAATGGATAA Protein sequence : MFAQWNRRMWIFPLDLIFMGISYFLAHWIRFESFIFLASPERFFISLAIVISVRSIVFILSDIYRSIWVYASIHDLVEII KVTLLSSLISTTALLFYNRFEQLSRMVPVLDTLLLLSFLCIRSFSWRVFRDQYILKKSKEEGLPTLILGAGKVGATLLSE IRRHNELKLNPVGFLDDNVQKIGAHIQGIPILAKIDQAEQIINRFGVKQVIIAMSSPDGKLISRLIRSFEHTDVKFKILP SLGSLFFDSPKLNQLREVQVEDLLGRPVVDLEIESIRSYLKGKSILVSGAGGSIGSELCRQVAVFEPSRILLLDSAETPL YEIEYELGKKLQGQNIELVPIVADIKNLSRISSIFEKHSPEVVFHSAAYKHVPMMEINPTEAVMNNVLGTKNIADISRIS GVERFVLISTDKAVNPVNIMGASKRAAELYLQHISRETRTKFITVRFGNVLGSNGSVIPRFREQIANGGPVTVTHPDVIR YFMTIPEATQLVLQAGSMGECGEIFILEMGEPVKILNLAEEMIRLCGLRPHVDIPIQFTGLRPGEKLFEELLLGLEGIKK THHPKIKIAAPLENQEATTFVARFNELLTLARANKDREIFLAFKALVPEYKIHGDYLNETNANQNLQNG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 6e-88 | 44 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-86 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| capD | YP_003529.1 | capsular polysaccharide biosynthesis protein | VFG1300 | Protein | 3e-88 | 45 |
