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Name : LIC12361 (LIC12361) Accession : YP_002293.1 Strain : Genome accession: NC_005823 Putative virulence/resistance : Resistance Product : permease Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 2861270 - 2862499 bp Length : 1230 bp Strand : - Note : major facilitator superfamily; MFS; identified by sequence similarity; ORF located using Blastx/Glimmer DNA sequence : TTGGGTGGAGTTATGAATCATAGACGACCTGCGGCTTTGGGTTTTATTTTTGTAACCATTTTGATTGATGTAATCGGATT TGGAATTATTATTCCAGTTTTACCAAAACTCATTCAGGAATTGACTCATGGAACTTTGAGCCAAGCCGCGTGGTATGGTG GGCTTTTGATGTTTGCGTATTCATTTGTGCAATTTGTTTGTGCTCCGTTTGTAGGTGGATTGAGTGATCGATACGGAAGA AGGCCGGTACTACTCGCTTCTCTTTTTGGTTTTACGTTAGATTATTTATTCTTAGCTTTTGCACCTTCCATTTTTTGGTT GTTTGTTGGAAGGATTTTAGCGGGAATCATGGGTGCGAGTTTTACAACTGGTTATGCCTATATCGCCGATATTAGTCCTC CCGAAAAAAGAGCACAGAATTTTGGAATTTTAGGAGCGGCGTTTGGATTTGGATTTATCATAGGGCCGGTGATCGGAGGT GTTCTAGGTCAATACGGTTCCAGAGCTCCGTTTTTAGCCGCGGCTGCCCTTACTCTTATAAATTGGTTGTTCGGTTTTTT TATTCTGCCAGAATCTTTAACTCCTGAAAATAGAAGAAAATTTGAATGGCAAAAGGCAAATCCAATTGGATCTCTTATCA ATCTGAAACGTTATCCTATGATCATAGGATTAGTAGTTGCATTTTTTCTAATGAACGTAGCGGCTCACTCCGTACAGGGA ACTTGGAATTATTATACAATGGAAAAATTTCAATGGAACGAGGCGATGGTGGGTTATTCTTTAGGAGTTGTAGGTCTTGT TTATGCAATCACACAAGGTGGATTGATTAGGATTATTCTTCCTGCGCTCGGACAGAATAAAAGTATTTATCTGGGACTGG CTTTAAGTGGATTGGGATATGCGTTATTCGCTCTTGCAACACAAAGTTGGATGATGTTTGTATTTTTAATTCCTTATTGT TTGGGAGGAATTGCAATGCCACCTCTTCAAGGGATCATGTCTTCTCAGGTTCCGTCAAATGAACAAGGAGAATTACAAGG AGCTCTTACTAGTTTGATGAGTGTGACCGCAATTCTAGGGCCAATTTTAATGACGGGTTTGTTCTCCTATTTTACCGCAA AAGGAACTCCTGTTTATTCACCAGAGGCACCTTTGTGGATGGGAACTATTTTGACGGCAGCGAGCCTTTGGATTACGGTT GGATCTCTTAGAAAACATCATTCGGAATGA Protein sequence : MGGVMNHRRPAALGFIFVTILIDVIGFGIIIPVLPKLIQELTHGTLSQAAWYGGLLMFAYSFVQFVCAPFVGGLSDRYGR RPVLLASLFGFTLDYLFLAFAPSIFWLFVGRILAGIMGASFTTGYAYIADISPPEKRAQNFGILGAAFGFGFIIGPVIGG VLGQYGSRAPFLAAAALTLINWLFGFFILPESLTPENRRKFEWQKANPIGSLINLKRYPMIIGLVVAFFLMNVAAHSVQG TWNYYTMEKFQWNEAMVGYSLGVVGLVYAITQGGLIRIILPALGQNKSIYLGLALSGLGYALFALATQSWMMFVFLIPYC LGGIAMPPLQGIMSSQVPSNEQGELQGALTSLMSVTAILGPILMTGLFSYFTAKGTPVYSPEAPLWMGTILTAASLWITV GSLRKHHSE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 3e-38 | 42 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 2e-38 | 42 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 2e-38 | 42 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 2e-38 | 42 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 3e-38 | 42 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 2e-38 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LIC12361 | YP_002293.1 | permease | Y19114.gene.p01 | Protein | 2e-38 | 43 |
| LIC12361 | YP_002293.1 | permease | NC_011586.7045189.p0 | Protein | 2e-38 | 42 |
| LIC12361 | YP_002293.1 | permease | Y19116.gene.p01 | Protein | 6e-27 | 42 |
| LIC12361 | YP_002293.1 | permease | AY264780.2.gene3.p01 | Protein | 3e-40 | 42 |
| LIC12361 | YP_002293.1 | permease | L06940.gene.p01 | Protein | 4e-27 | 42 |
| LIC12361 | YP_002293.1 | permease | X75761.gene.p01 | Protein | 7e-39 | 42 |
| LIC12361 | YP_002293.1 | permease | NC_010410.6002597.p0 | Protein | 1e-38 | 42 |
| LIC12361 | YP_002293.1 | permease | CP001485.1.gene2821. | Protein | 1e-38 | 42 |
| LIC12361 | YP_002293.1 | permease | AF534183.gene.p01 | Protein | 1e-38 | 42 |
| LIC12361 | YP_002293.1 | permease | AF090987.gene.p01 | Protein | 6e-31 | 41 |
