Gene Information

Name : yopD (YP_pCD55)
Accession : NP_995383.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : putative Yop negative regulation/targeting component YopD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 40645 - 41565 bp
Length : 921 bp
Strand : +
Note : Best Blastp hit = gi|16082716|ref|NP_395162.1| (NC_003131) putative Yop negative regulation/targeting component [Yersinia pestis] gi|11284339|pir||T43597 yop targeting negative regulator - Yersinia pestis plasmid pCD1, gi|2996254|gb|AAC62577.1| (AF053946)

DNA sequence : 
ATGACAATAAATATCAAGACAGACAGCCCAATTATCACGACCGGTTCACAGCTTGATGCCATCACTACAGAGACAGTCAA
GCAAAGCGGTGAGATTAAAAAAACAGAAGACACCCGTCATGAAGCACAAGCAATAAAGAGTAGCGAGGCAAGCTTATCTC
GGTCACAGGTGCCAGAATTGATCAAACCGAGCCAGGGAATCAATGTTGCATTACTGAGTAAAAGCCAGGGTGATCTTAAT
GGTACTTTAAGTATCTTGTTGTTGCTGTTGGAACTGGCACGTAAAGCGCGAGAAATGGGTTTGCAACAAAGGGATATAGA
AAATAAAGCTACTATTACTGCCCAAAAGGAGCAGGTAGCGGAGATGGTCAGCGGTGCAAAACTGATGATCGCCATGGCGG
TGGTGTCTGGCATCATGGCTGCTACTTCTACGGTTGCTAGTGCTTTTTCTATAGCGAAAGAGGTGAAAATAGTTAAACAG
GAACAAATTCTAAACAGTAATATTGCTGGCCGCGAACAACTTATTGATACAAAAATGCAGCAAATGAGTAACATTGGTGA
TAAAGCGGTAAGCAGAGAGGATATCGGGAGAATATGGAAACCAGAGCAGGTAGCGGATCAAAATAAGCTGGCATTATTGG
ATAAAGAATTCAGAATGACCGACTCAAAAGCCAATGCGTTTAATGCCGCAACGCAGCCGTTAGGACAAATGGCAAACAGT
GCGATTCAAGTTCATCAAGGGTATTCTCAAGCCGAGGTCAAAGAGAAAGAAGTCAATGCAAGTATTGCTGCCAACGAGAA
GCAAAAAGCCGAAGAGGCGATGAACTATAATGATAACTTTATGAAAGATGTCCTGCGCTTGATTGAACAATATGTTAGCA
GTCATACTCACGCCATGAAAGCCGCTTTTGGTGTTGTCTGA

Protein sequence : 
MTINIKTDSPIITTGSQLDAITTETVKQSGEIKKTEDTRHEAQAIKSSEASLSRSQVPELIKPSQGINVALLSKSQGDLN
GTLSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQ
EQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANS
AIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFGVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopD AAO18056.1 LopD Virulence TTSS locus Protein 7e-44 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yopD NP_995383.1 putative Yop negative regulation/targeting component YopD VFG0378 Protein 2e-132 100