Gene Information

Name : yopB (YP_pCD54)
Accession : NP_995382.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : putative Yop targeting protein YopB
Function : -
COG functional category : S : Function unknown
COG ID : COG5613
EC number : -
Position : 39421 - 40626 bp
Length : 1206 bp
Strand : +
Note : Best Blastp hit =gi|16082717|ref|NP_395163.1| (NC_003131) putative Yop targeting protein (401 aa) [Yersinia pestis] gi|11354337|pir||T43596 yop targeting protein - Yersinia pestis plasmid pCD1, gi|2996253|gb|AAC62576.1| (AF053946) YopB homolog [Yersinia p

DNA sequence : 
ATGAGTGCGTTGATAACCCATGACCGCTCAACGCCAGTAACTGGAAGTCTACTTCCCTACGTCGAGACACCAGCGCCCGC
CCCCCTTCAGACCCAACAAGTCGCGGGAGAACTGAAGGATAAAAATGGCGGGGTGAGTTCTCAGGGCGTACAGCTCCCTG
CACCACTAGCAGTGGTTGCCAGCCAAGTTACTGAAGGACAACAGCAAGAAGTCACTAAATTATTGGAGTCGGTCACCCGC
GGCGCGGCAGGATCTCAACTGATATCAAATTATGTTTCAGTGCTAACGAAGTTTACGCTTGCTTCACCTGATACATTTGA
GATTGAGTTAGGTAAGCTAGTTTCTAATTTAGAAGAAGTACGCAAAGACATAAAAATCGCTGATATTCAGCGTCTTCATG
AACAAAACATGAAGAAAATTGAAGAGAATCAAGAGAAAATCAAAGAAACAGAAGAGAATGCCAAGCAAGTCAAGAAATCC
GGCATCGCATCAAAGATTTTTGGCTGGCTCAGCGCCATAGCCTCAGTGATTGTCGGTGCCATCATGGTGGCCTCAGGGGT
AGGAGCCGTTGCCGGTGCAATGATGGTTGCCTCAGGCGTAATTGGGATGGCGAATATGGCAGTGAAACAAGCGGCGGAAG
ATGGCCTGATATCCCAAGAGGCAATGAAAATATTAGGGCCGATACTCACTGCGATTGAAGTCGCATTGACTGTAGTTTCA
ACCGTAATGACCTTTGGCGGTTCGGCACTAAAATGCCTGGCTAATATTGGCGCAAAACTCGGTGCTAACACCGCAAGTCT
TGTGGCTAAAGGAGCCGAGTTTTCGGCCAAAGTTGCCCAAATTTCGACAGGCATATCAAACACTGTCGGGAGTGCAGTGA
CTAAATTAGGGGGCAGTTTTGCTGGTTTAACAATGAGCCATGCAATCCGTACAGGATCACAGGCAACACAAGTCGCCGTT
GGTGTGGGCAGCGGAATAACTCAGACCATCAATAATAAAAAGCAAGCTGATTTACAACATAATAACGCTGATTTGGCCTT
GAACAAGGCAGACATGGCAGCGTTACAAAGTATTATTGACCGACTCAAAGAAGAGTTATCCCATTTGTCAGAGTCACATC
AACAAGTGATGGAACTGATTTTCCAGATGATTAATGCAAAAGGTGACATGCTGCATAATTTGGCCGGCAGACCCCATACT
GTTTAA

Protein sequence : 
MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTR
GAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKS
GIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVS
TVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAV
GVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHT
V

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopB AAO18055.1 LopB Virulence TTSS locus Protein 7e-41 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yopB NP_995382.1 putative Yop targeting protein YopB VFG0379 Protein 3e-158 100
yopB NP_995382.1 putative Yop targeting protein YopB VFG0203 Protein 3e-44 42