Gene Information

Name : sycD (YP_pCD53)
Accession : NP_995381.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : putative yopB/yopD chaperone SycD
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG5010
EC number : -
Position : 38937 - 39443 bp
Length : 507 bp
Strand : +
Note : Best Blastp hit =gi|16082718|ref|NP_395164.1| (NC_003131) putative yopB/yopD chaperone [Yersinia pestis] gi|126026|sp|P21207|LCRH_YERPE Low calcium response locus protein H, gi|96997|pir||C33601 low calcium response protein H - Yersinia pestis plasmid pCD

DNA sequence : 
ATGCAACAAGAGACGACAGACACTCAAGAATACCAGCTGGCAATGGAATCCTTCCTAAAAGGAGGGGGAACTATCGCCAT
GCTCAACGAAATTTCAAGTGACACTTTAGAGCAACTCTACTCTCTTGCATTTAACCAATACCAGTCAGGAAAATACGAGG
ATGCTCACAAGGTCTTTCAAGCTCTCTGTGTGCTAGACCACTATGATTCACGTTTCTTTTTAGGGCTAGGCGCTTGTCGT
CAAGCCATGGGGCAATACGACTTAGCGATTCATAGCTACAGCTATGGCGCCATAATGGATATAAAAGAACCTCGTTTTCC
GTTTCATGCGGCCGAATGTTTACTGCAAAAGGGAGAGCTTGCTGAAGCAGAAAGTGGCTTGTTCTTGGCTCAAGAGCTTA
TCGCAGACAAAACTGAGTTTAAGGAGCTTTCCACCCGAGTTAGCTCAATGTTAGAAGCAATTAAATTGAAAAAGGAGATG
GAACATGAGTGCGTTGATAACCCATGA

Protein sequence : 
MQQETTDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACR
QAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLEAIKLKKEM
EHECVDNP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssH AAO18054.1 LssH Virulence TTSS locus Protein 1e-47 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sycD NP_995381.1 putative yopB/yopD chaperone SycD VFG0380 Protein 5e-75 100
sycD NP_995381.1 putative yopB/yopD chaperone SycD VFG0202 Protein 4e-45 57