Gene Information

Name : lcrR (YP_pCD50)
Accession : NP_995378.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 37189 - 37629 bp
Length : 441 bp
Strand : +
Note : Best Blastp hit =gi|16082721|ref|NP_395167.1| (NC_003131) hypothetical protein lcrR [Yersini a pestis] gi|17379189|sp|P19393|LCRR_YERPE Low calcium response locus protein R, gi|11282508|pir||T43592 low calcium response protein R - Yersinia pestis plasmid

DNA sequence : 
ATGATGGCAGATCCTTTAATTCCGTGGCTTACCGAACATGGCTTGGTTTGCCACCCTCATACTTTGTCTGGCACCCCCAT
TTCTTTAGGTTCGGCCTTTCAATTAGCTGGCCTCAAGCTTGCCTGGCGCGTAGAAATTGAACAAAGGCGGGTTTGGATCG
TGCTTATCCAACGAGTGGAACAACGTCGAGGGCTGAAAAATCCCTTCGCGGCACTTTATATGTTAGCTAATGCAGCGCGG
GCCGTTCTTGGCCCTGACTATTATCTGTATGGCAATGTCGATGTACTGGCGGGGAGTTCTCTCAGTACGCAACGGCTCGC
TCATTTTTATCGGCGTTGGACCGGGGCCAAAGAATTAAGCACCGGGTGGTTCTCACTAAAAGTATCACAAGTCATCACCT
TATCTAATATGAAAAAGCGACAAAACAACGGCTTTGCCTGA

Protein sequence : 
MMADPLIPWLTEHGLVCHPHTLSGTPISLGSAFQLAGLKLAWRVEIEQRRVWIVLIQRVEQRRGLKNPFAALYMLANAAR
AVLGPDYYLYGNVDVLAGSSLSTQRLAHFYRRWTGAKELSTGWFSLKVSQVITLSNMKKRQNNGFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssR AAO18051.1 LssR Virulence TTSS locus Protein 4e-26 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lcrR NP_995378.1 hypothetical protein VFG0383 Protein 3e-59 100
lcrR NP_995378.1 hypothetical protein VFG0199 Protein 1e-26 52