Gene Information

Name : yscX (YP_pCD47)
Accession : NP_995375.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : putative type III secretion protein YscX
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 34382 - 34750 bp
Length : 369 bp
Strand : +
Note : Best Blastp hit =gi|16082724|ref|NP_395170.1| (NC_003131) putative type III secretion protein (122 aa) [Yersinia pestis], gi|11282510|pir||T43589 hypothetical protein Y0045 - Yersinia pestis plasmid pCD1, gi|2996246|gb|AAC62569.1| (AF053946) unknown [Yers

DNA sequence : 
GTGAGTCGCATAATAACTGCCCCCCATATTGGCATCGAAAAACTGTCGGCGATTAGCCTGGAAGAGCTATCCTGTGGCTT
GCCTGAACGTTATGCCTTGCCGCCTGATGGGCATCCAGTCGAACCACATTTAGAGCGCCTTTACCCTACAGCACAAAGCA
AGCGTAGCCTATGGGACTTTGCTTCTCCCGGCTATACATTTCATGGATTACATCGAGCTCAAGATTATCGGCGCGAACTG
GATACCTTGCAGTCACTGCTAACCACCAGTCAGTCCTCAGAGCTACAAGCTGCCGCGGCGCTGCTTAAATGCCAACAAGA
TGATGATCGGTTACTGCAAATAATCCTTAACCTGTTGCACAAAGTATGA

Protein sequence : 
MSRIITAPHIGIEKLSAISLEELSCGLPERYALPPDGHPVEPHLERLYPTAQSKRSLWDFASPGYTFHGLHRAQDYRREL
DTLQSLLTTSQSSELQAAAALLKCQQDDDRLLQIILNLLHKV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssB AAO18048.1 LssB Virulence TTSS locus Protein 6e-18 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscX NP_995375.1 putative type III secretion protein YscX VFG0386 Protein 8e-39 100
yscX NP_995375.1 putative type III secretion protein YscX VFG0196 Protein 5e-14 50