Gene Information

Name : sycN (YP_pCD46)
Accession : NP_995374.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : putative type III secretion protein SycN
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 34014 - 34385 bp
Length : 372 bp
Strand : +
Note : Best Blastp hit =gi|16082725|ref|NP_395171.1| (NC_003131) putative type III secretion protein (123 aa) [Yersinia pestis]gi|140990|sp|P16162|Y6D7_YERPE Hypothet ical protein YPCD1.37c, gi|79201|pir||S15322 hypothetical protein 2 - Yersinia pseudotuberculos

DNA sequence : 
GTGAGTTGGATTGAACCCATCATTTCCCATTTCTGCCAGGATCTGGGAGTGCCAACATCTAGCCCCCTTTCGCCTCTTAT
TCAATTAGAGATGGCTCAATCTGGCACGCTGCAACTGGAACAACATGGTGCGACACTGACATTGTGGTTAGCGCGTTCTC
TTGCCTGGCACCGGTGCGAAGATGCTATGGTCAAAGCGCTAACGCTCACGGCGGCCCAAAAGAGTGGCGCTTTACCGCTG
CGAGCGGGGTGGTTAGGGGAAAGTCAGCTGGTGTTATTTGTCTCGCTTGATGAGCGTTCCTTAACCTTGCCCCTTTTACA
TCAAGCTTTCGAACAGTTACTGCGATTGCAGCAAGAGGTGCTTGCGCCGTGA

Protein sequence : 
MSWIEPIISHFCQDLGVPTSSPLSPLIQLEMAQSGTLQLEQHGATLTLWLARSLAWHRCEDAMVKALTLTAAQKSGALPL
RAGWLGESQLVLFVSLDERSLTLPLLHQAFEQLLRLQQEVLAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssN AAO18047.1 LssN Virulence TTSS locus Protein 3e-32 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sycN NP_995374.1 putative type III secretion protein SycN VFG0387 Protein 2e-51 100
sycN NP_995374.1 putative type III secretion protein SycN VFG0195 Protein 8e-26 48