Gene Information

Name : yscO (YP_pCD42)
Accession : NP_995370.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : putative type III secretion protein YscO
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 30909 - 31373 bp
Length : 465 bp
Strand : -
Note : Best Blastp hit =gi|16082729|ref|NP_395175.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|11354333|pir||T43584 type III secretion protein yscO - Yersinia pestis plasmid pCD1, gi|2465656|gb|AAB72198.1| (AF020214) YscO [Yersinia pes

DNA sequence : 
ATGATACGCCGCCTGCACCGGGTTAAAGTTTTACGCGTTGAACGTGCGGAGAAAGCCATCAAGACTCAGCAAGCTTGCTT
GCAGGCAGCTCATCGACGTCATCAAGAGGCGGTGCAAACCAGTCAGGATTACCATTTGTGGCGTATTGATGAGGAGCAAC
GTCTATTTGATCAGCGAAAAAACACCACACTGAATTGTAAAGATTTGGAGAAATGGCAGCGACAAATAGCGTCGCTACGT
GAAAAGGAGGCCAATTATGAACTGGAGTGCGCCAAATTATTGGAACGTTTAGCCAATGAGCGTGAGCGCCTTACGTTATG
CCAAAAGATGCTGCAACAGGCTCGTCATAAGGAAAATAAGTTTCTCGAGCTAGTGCGACGAGAAGATGAAGATGAGCTAA
ATCAACAACATTATCAGGAAGAACAAGAACAAGAAGAGTTTCTACAGCATCACAGGAACGCCTAA

Protein sequence : 
MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRKNTTLNCKDLEKWQRQIASLR
EKEANYELECAKLLERLANERERLTLCQKMLQQARHKENKFLELVRREDEDELNQQHYQEEQEQEEFLQHHRNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscO AAO18043.1 LscO Virulence TTSS locus Protein 2e-20 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscO NP_995370.1 putative type III secretion protein YscO VFG0391 Protein 3e-43 100