Gene Information

Name : yscS (YP_pCD38)
Accession : NP_995366.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : type III secretion protein yscS YscS
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 27704 - 27970 bp
Length : 267 bp
Strand : -
Note : Best Blastp hit =gi|10955565|ref|NP_052406.1| (NC_002120) YscS [Yersinia enterocolitica], gi|16082733|ref|NP_395179.1| (NC_003131) putative type III secretion protein [Yersinia pestis], gi|732267|sp|P40298|yscS_Y ERPE Yop proteins translocation protein S,

DNA sequence : 
ATGAGTCAAGGTGACATAATTCACTTCACCAGTCAGGCATTATGGCTGGTGCTAGTCCTTTCAATGCCGCCGGTGTTAGT
GGCTGCGGTGGTAGGAACTTTGGTATCTTTAGTACAAGCTTTAACGCAAATCCAAGAGCAAACTCTGGGCTTCGTTATCA
AATTGATCGCTGTGGTGGTCACACTGTTTGCTACCGCCTCGTGGCTTGGTAATGAATTGCACAGTTTTGCAGAAATGACC
ATGATGAAGATACAAGGCATAAGATGA

Protein sequence : 
MSQGDIIHFTSQALWLVLVLSMPPVLVAAVVGTLVSLVQALTQIQEQTLGFVIKLIAVVVTLFATASWLGNELHSFAEMT
MMKIQGIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscS AAO18039.1 LscS Virulence TTSS locus Protein 2e-19 79
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 4e-08 52
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 4e-08 52
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 3e-08 52
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 4e-08 52
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 4e-08 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscS NP_995366.1 type III secretion protein yscS YscS VFG0395 Protein 7e-25 100
yscS NP_995366.1 type III secretion protein yscS YscS VFG0187 Protein 2e-11 75
yscS NP_995366.1 type III secretion protein yscS YscS VFG0043 Protein 5e-08 56
yscS NP_995366.1 type III secretion protein yscS YscS VFG0520 Protein 1e-08 52