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Name : yscD (YP_pCD30) Accession : NP_995358.1 Strain : Genome accession: NC_005813 Putative virulence/resistance : Virulence Product : putative type III secretion protein YscD Function : - COG functional category : - COG ID : - EC number : - Position : 20047 - 21306 bp Length : 1260 bp Strand : - Note : Best Blastp hit =gi|16082741|ref|NP_395187.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|11282513|pir||T43572 type III secret ion protein yscD - Yersinia pestis plasmid pCD1, gi|155447|g b|AAA27639.1| (M83225) ORF [Yersinia pesti DNA sequence : GTGAGTTGGGTCTGTCGTTTTTATCAAGGGAAGCACCGTGGTGTTGAAGTTGAGCTTCCTCATGGGCGCTGTGTTTTTGG TTCAGACCCGTTGCAGTCAGATATTGTTCTTTCTGACAGCGAAATAGCACCCGTGCATTTAGTGCTGATGGTCGATGAAG AAGGTATTCGCCTAACTGATTCTGCAGAACCTCTACTACAAGAAGGGCTTCCCGTGCCGTTGGGGACTCTTCTTCGCGCG GGCTCTTGTCTGGAAGTAGGTTTTTTACTGTGGACATTTGTCGCCGTAGGGCAACCTTTGCCAGAGACGTTACAGGTTCC CACGCAGAGAAAAGAGCCAACCGACAGGTTACCTCGTTCACGACTTGGGATTGGGCTTGGAGTTCTTTCTTTATTGTTGC TTTTGACTTTTTTGGGGCTGCTAGGGCACGGATTGTGGCGCGAGTATAACCAGGATGGACAACTTGTTGAGCAAGAAGTA CGGCGCTTGCTGGCAACTGCTGCTTACAAGGATGTCGTTTTAACATCGCCCAAAAAAGAGGGTGAACCTTGGTTATTAAC TGGTTATATCCAGGATAATCATGCCCGCTTGTCACTGCAAAATTTTCTTGAGAGCCATGGCATTCCATTCCGGCTTGAAC TGCGCAGCATGGAAGAACTGCGTCAGGGGGCAGAATTCATCCTGCAACGGTTGGGATACCATGGAATTGAGGTTTCTTTA GCACCGCAAGCGGGATGGCTACAATTGAATGGGGAAGTGTCAGAGGAAATACAAAAGCAAAAAATTGATAGCCTGCTGCA AGCTGAAGTGCCAGGGCTGCTCGGTGTAGAAAGTAAAGTGCGGATTGCCGGTAATCAACGCAAGCGGCTTGATGCATTAC TTGAACAATTTGGTCTGGATTCAGATTTCACTGTAAATGTTAAAGGTGAGCTGATTGAATTACGCGGGCAAGTCAATGAT GAAAAATTGAATTCATTTAATCAACTACAACAAACTTTTCGCCAAGAGTTTGGCAATCGACCTAAATTAGAACTGGTCAA TGTCGGGGGGCAACCCCAGCATGATGAATTGAATTTCGAGGTGCAAGCTATCTCGTTAGGGAAAGTGCCTTATGTGGTAC TCGACAATCATCAACGCTATCCAGAAGGTGCCATACTTAACAATGGCGTTCGTATTCTGGCTATTCGACGCGATGCGGTG ATTGTGAGTAAAGGAAAACGGGAATTTGTGATCCAACTCAATGGAGGTAAACCTCGATGA Protein sequence : MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRA GSCLEVGFLLWTFVAVGQPLPETLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYNQDGQLVEQEV RRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSL APQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVND EKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAV IVSKGKREFVIQLNGGKPR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscD | AAO18032.1 | LscD | Virulence | TTSS locus | Protein | 4e-82 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yscD | NP_995358.1 | putative type III secretion protein YscD | VFG0403 | Protein | 0.0 | 100 |
| yscD | NP_995358.1 | putative type III secretion protein YscD | VFG0212 | Protein | 4e-75 | 43 |
