Gene Information

Name : yscF (YP_pCD28)
Accession : NP_995356.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : putative type III secretion protein YscF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 19586 - 19849 bp
Length : 264 bp
Strand : -
Note : Best Blastp hit =gi|16082743|ref|NP_395189.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|11354331|pir||T43570 type III secret ion protein yscF - Yersinia pestis plasmid pCD1, gi|2996226| gb|AAC62549.1| (AF053946) Yop proteins tra

DNA sequence : 
ATGAGTAACTTCTCTGGATTTACGAAAGGAACCGATATCGCAGACTTAGATGCGGTGGCTCAAACGCTCAAGAAGCCAGC
AGACGATGCAAACAAAGCGGTTAATGACTCGATAGCAGCATTGAAAGATAAGCCTGACAACCCGGCGCTACTTGCTGACT
TACAACATTCAATTAATAAATGGTCGGTAATTTACAATATAAACTCAACCATAGTTCGTAGCATGAAAGACTTAATGCAA
GGCATCCTACAGAAGTTCCCATAA

Protein sequence : 
MSNFSGFTKGTDIADLDAVAQTLKKPADDANKAVNDSIAALKDKPDNPALLADLQHSINKWSVIYNINSTIVRSMKDLMQ
GILQKFP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscF AAO18031.1 LscF Virulence TTSS locus Protein 1e-23 75

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscF NP_995356.1 putative type III secretion protein YscF VFG0405 Protein 5e-35 100
yscF NP_995356.1 putative type III secretion protein YscF VFG0214 Protein 2e-19 69