Gene Information

Name : yscI (YP_pCD25)
Accession : NP_995353.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : putative type III secretion protein YscI
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 18395 - 18742 bp
Length : 348 bp
Strand : -
Note : Best Blastp hit =gi|16082746|ref|NP_395192.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|401691|sp|Q00933|yscI_YERPE Yop proteins translocation protein I (Low calcium response locus protein O) gi|11280509|pir||T43567 type III sec

DNA sequence : 
ATGCCGAACATAGAAATAGCTCAGGCCGATGAGGTGATCATAACCACGCTGGAGGAATTAGGGCCGGCAGAGCCAACAAC
TGACCAAATAATGCGCTTTGATGCGGCAATGTCAGAAGATACGCAGGGACTGGGCCATTCACTCCTCAAGGAGGTTAGTG
ATATTCAGAAGTCTTTTAAGACGGTTAAAAGTGACTTACACACTAAGCTGGCTGTTTCAGTTGATAATCCCAACGACCTG
ATGCTAATGCAATGGTCACTTATCCGTATAACAATCCAAGAAGAACTTATCGCCAAGACTGCCGGGCGAATGAGCCAAAA
TGTTGAAACCTTGTCGAAGGGGGGGTGA

Protein sequence : 
MPNIEIAQADEVIITTLEELGPAEPTTDQIMRFDAAMSEDTQGLGHSLLKEVSDIQKSFKTVKSDLHTKLAVSVDNPNDL
MLMQWSLIRITIQEELIAKTAGRMSQNVETLSKGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscI AAO18028.1 LscI Virulence TTSS locus Protein 1e-24 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscI NP_995353.1 putative type III secretion protein YscI VFG0408 Protein 3e-49 100
yscI NP_995353.1 putative type III secretion protein YscI VFG0217 Protein 2e-21 49