Gene Information

Name : yscJ (YP_pCD24)
Accession : NP_995352.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : putative type III secretion lipoprotein YscJ
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 17654 - 18388 bp
Length : 735 bp
Strand : -
Note : Best Blastp hit =gi|16082747|ref|NP_395193.1| (NC_003131) putative type III secretion lipoprotein [Yersinia pestis], gi|401692|sp|Q00926|yscJ_YERPE Yop proteins translocation lipoprotein J precursor (YlpB lipoprotein) (Low calcium response locus protein K

DNA sequence : 
GTGAAAGTTAAGACTTCACTGTCAACATTGATATTAATCTTGTTTTTAACTGGTTGCAAAGTTGATCTTTATACCGGAAT
TAGTCAGAAGGAAGGGAACGAAATGCTTGCGCTGTTGCGCCAAGAAGGCCTTTCCGCAGACAAAGAGCCAGACAAAGATG
GGAAGATTAAGCTCTTGGTTGAGGAGTCAGATGTCGCTCAGGCTATTGATATTCTCAAACGGAAGGGCTATCCACACGAG
AGTTTCTCCACGTTACAGGATGTGTTCCCCAAAGATGGGTTGATATCTTCACCGATAGAAGAGTTGGCGAGGCTTAATTA
TGCCAAGGCGCAAGAGATCTCCCGCACTTTATCTGAAATTGACGGGGTATTAGTGGCTCGAGTGCATGTCGTATTGCCTG
AAGAGCAAAATAACAAAGGTAAGAAGGGTGTAGCAGCATCCGCTTCGGTTTTTATCAAGCATGCAGCAGATATTCAGTTT
GATACCTACATACCTCAGATTAAACAATTAGTGAATAATAGTATTGAGGGGCTGGCCTATGATCGCATCAGTGTCATTTT
GGTGCCATCGGTAGATGTTCGTCAAAGCTCTCATTTACCTCGTAACACGAGCATACTGTCAATTCAAGTGAGTGAAGAGT
CAAAAGGGCATCTTATTGGCTTGTTGTCGTTGCTTATTTTGCTTTTGCCAGTGACCAATCTTGCTCAATATTTTTGGTTA
CAACGCAAGAAGTGA

Protein sequence : 
MKVKTSLSTLILILFLTGCKVDLYTGISQKEGNEMLALLRQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHE
SFSTLQDVFPKDGLISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIKHAADIQF
DTYIPQIKQLVNNSIEGLAYDRISVILVPSVDVRQSSHLPRNTSILSIQVSEESKGHLIGLLSLLILLLPVTNLAQYFWL
QRKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 6e-76 76
hrcJ AAB05080.1 HrcJ Virulence Hrp PAI Protein 2e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscJ NP_995352.1 putative type III secretion lipoprotein YscJ VFG0409 Protein 9e-97 100
yscJ NP_995352.1 putative type III secretion lipoprotein YscJ VFG0218 Protein 5e-73 74
yscJ NP_995352.1 putative type III secretion lipoprotein YscJ VFG0051 Protein 1e-31 41